This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.
Guangchuang YU, School of Public Health, The University of Hong Kong http://ygc.name
Please cite the following article when using clusterProfiler:
Yu G, Wang L, Han Y and He Q.
clusterProfiler: an R package for comparing biological themes among gene clusters.
OMICS: A Journal of Integrative Biology, 2012, 16(5):284-287.
URL: http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
All source code is copyright, under the Artistic-2.0 License. For more information on Artistic-2.0 License see http://opensource.org/licenses/Artistic-2.0
To install:
- the latest released version:
biocLite("clusterProfiler") - the latest development version:
install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/clusterProfiler"))
- Why clusterProfiler fails
- KEGG enrichment analysis with latest online data using clusterProfiler
- DAVID functional analysis with clusterProfiler
- Enrichment map
- a formula interface for GeneOntology analysis
To view the vignette of clusterProfiler installed in your system, start R and enter:
vignette("clusterProfiler", package="clusterProfiler")- If you have any, let me know. Thx!