jameslz

Biostack.ORG, The Bioinformatics Community

Logic Informatics Co.,LtdShanghai, China

Pinned Repositories

atlas-utils
tools for microbiome data analysis
Language:C6 3 02
benchmark
Bioinformatics scripts
Language:C5 2 13
biostack-suits
utils for building pipelines
Language:Perl1 2 01
denoise-kit
denoise amplicon sequencing data with USEARCH unoise3
Language:Perl0 1 00
dix-seq
Dix-seq: An integrated pipeline for fast amplicon data analysis
Language:Perl3 1 00
emapper-utils
emapper-utils: utils for parse emapper result
Language:C10 2 24
fastx-utils
fastx-utils using klib
Language:C18 4 22
ncbi-kit
Download NCBI assembly genomes with ftp. rsync, ascp
Language:Perl11 1 00
plasmids-inspect
Mining and annotation plasmids contigs and AMR genes from metagenome datasets
Language:Perl1 1 00
protocols
protocols for bioinformatics data analysis
9 3 11

jameslz's Repositories

jameslz/fastx-utils
fastx-utils using klib
Language:C18 4 22
jameslz/ncbi-kit
Download NCBI assembly genomes with ftp. rsync, ascp
Language:Perl11 1 00
jameslz/emapper-utils
emapper-utils: utils for parse emapper result
Language:C10 2 24
jameslz/protocols
protocols for bioinformatics data analysis
9 3 11
jameslz/atlas-utils
tools for microbiome data analysis
Language:C6 3 02
jameslz/flye-kit
long reads assembly with Flye and Pilon
Language:Perl4 1 0
jameslz/ko-search
reimplement kofamscan using hmm-utils for KEGG Knumber annotation
4 2 01
jameslz/tsv-utils
Tools for tab-separated file
4 2 0
jameslz/div-utils
div-utils: tools for microbiome data analysis
3 3 0
jameslz/dix-seq
Dix-seq: An integrated pipeline for fast amplicon data analysis
Language:Perl3 1 00
jameslz/taxon-utils
taxon-utils: utils for NCBI taxonomy manipulation
Language:Perl3 2 0
jameslz/blast-utils
utils to manipulate blast6out files
2 2 01
jameslz/biostack-suits
utils for building pipelines
Language:Perl1 2 01
jameslz/crAssphage-kit
crAssphage-kit: identify crAss-like phage in assembled metagenome viral contigs.
Language:Perl1 1 0
jameslz/integrall-db
download and parse integrall entries
1 2 11
jameslz/plasmids-inspect
Mining and annotation plasmids contigs and AMR genes from metagenome datasets
Language:Perl1 1 00
jameslz/denoise-kit
denoise amplicon sequencing data with USEARCH unoise3
Language:Perl0 1 00
jameslz/ascp_utils
utils to download data from NCBI/ENA
Language:Perl2 0
jameslz/awesome-algorithms
A curated list of awesome places to learn and/or practice algorithms.
2 0
jameslz/dbcan-kit
CAZymes annotation using dbCAN
Language:Perl
jameslz/go-utils
utils for gene ontology data manipulation
2 0
jameslz/meta-links
associate function catalog, abundance and taxonomy
2 0
jameslz/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Language:Shell1 0
jameslz/panphylo
Construction phylogenetic tree using genome or amino acid sequences
1 01
jameslz/qiim-tk
Amplicon data analysis using QIIME2
2 01
jameslz/sistr_cmd
SISTR (Salmonella In Silico Typing Resource) command-line tool
Language:Python1 0
jameslz/snippets
code snippets
Language:C2 0
jameslz/variation-utils
utils for variation analysis
2 0
jameslz/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
Language:C++0 0
jameslz/VirSorter
Source code of the VirSorter App, available on CyVerse (https://de.iplantcollaborative.org/de/)
Language:Perl2 0