Pinned Repositories
atlas-utils
tools for microbiome data analysis
benchmark
Bioinformatics scripts
biostack-suits
utils for building pipelines
denoise-kit
denoise amplicon sequencing data with USEARCH unoise3
dix-seq
Dix-seq: An integrated pipeline for fast amplicon data analysis
emapper-utils
emapper-utils: utils for parse emapper result
fastx-utils
fastx-utils using klib
ncbi-kit
Download NCBI assembly genomes with ftp. rsync, ascp
plasmids-inspect
Mining and annotation plasmids contigs and AMR genes from metagenome datasets
protocols
protocols for bioinformatics data analysis
jameslz's Repositories
jameslz/benchmark
Bioinformatics scripts
jameslz/blast_table2xml
Convert blast m6 format to xml for blast2go
jameslz/c-algorithms
A library of common data structures and algorithms written in C.
jameslz/ncbi-utils
utils to download, manipulate NCBI data
jameslz/oneliners
Useful bash one-liners for bioinformatics.
jameslz/otu-upset
Upset visualization for 16S OTU table
jameslz/scripts
scripts
jameslz/seqtk_subseq
Extract sequences with/without names in list
jameslz/seqtu
Automatically exported from code.google.com/p/seqtu
jameslz/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
jameslz/bam-manipulator
Easily perform various operations on BAM files
jameslz/bioconda-recipes
Conda recipes for the bioconda channel.
jameslz/Blast2Bam
jameslz/clusterProfiler
statistical analysis and visulization of functional profiles for genes and gene clusters
jameslz/docker-resources
Docker resources collection. docker资源汇总
jameslz/dockerfiles
jameslz/dotfiles
Dotfiles
jameslz/fastq-tools
Small utilities for working with fastq sequence files.
jameslz/fxtract
Extract sequences from a fastx file given a subsequence or identifier
jameslz/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
jameslz/idba_mt-and-idba_mtp
export from https://code.google.com/archive/p/hku-idba-mt/source/default/source
jameslz/k8
k8 Javascript shell
jameslz/klib
A standalone and lightweight C library
jameslz/libmaus2
collection of data structures and algorithms
jameslz/packages
List of packages for Nimble
jameslz/rlzap
RLZAP: Relative Lempel-Ziv with Adaptive Pointers
jameslz/seqan
SeqAn's official repository.
jameslz/squeakr
Squeakr: An Exact and Approximate k -mer Counting System
jameslz/taxon-bin-dist-utils
taxon-bin-dist-utils: utils to associate taxonomy profiling and functional profiling
jameslz/wfes
Wright-Fisher Exact Solver