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core gene alignment and snp calling using snp-sites.
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mash distance and upgma tree.
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cgMLST using PubMLST scheme to generate distance matrix, splittree for Neighbor-Net phylogenetic network.
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orthofinder to infer species tree.
core gene alignment and snp calling using snp-sites.
mash distance and upgma tree.
cgMLST using PubMLST scheme to generate distance matrix, splittree for Neighbor-Net phylogenetic network.
orthofinder to infer species tree.