Pinned Repositories
Acquisition2P_class
For managing 2P imaging datasets from preprocessing to activity trace extraction
deepethogram
logistic_regression
opencv_transforms
OpenCV implementation of Torchvision's image augmentations
PIMAQ
Multiple camera acquisition toolbox in Python
pose_annotator
Free, open-source GUI for annotating keypoints for pose estimation
vidio
simple, performant video reading and writing in python
jbohnslav's Repositories
jbohnslav/opencv_transforms
OpenCV implementation of Torchvision's image augmentations
jbohnslav/deepethogram
jbohnslav/vidio
simple, performant video reading and writing in python
jbohnslav/PIMAQ
Multiple camera acquisition toolbox in Python
jbohnslav/pose_annotator
Free, open-source GUI for annotating keypoints for pose estimation
jbohnslav/logistic_regression
jbohnslav/Acquisition2P_class
For managing 2P imaging datasets from preprocessing to activity trace extraction
jbohnslav/B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
jbohnslav/BigGAN-PyTorch
The author's officially unofficial PyTorch BigGAN implementation.
jbohnslav/cortexModel
Recurrent cortical circuit model based on adaptive-exponential integrate and fire neurons. Includes 3 interneuron subtypes (PV, SOM, and VIP). Implemented in MATLAB (2016b)
jbohnslav/DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals including humans
jbohnslav/DeepLabCut-core
Headless DeepLabCut (no GUI support)
jbohnslav/jbohnslav.github.io
jbohnslav/kornia
Open Source Differentiable Computer Vision Library for PyTorch
jbohnslav/lightning
Build and train PyTorch models and connect them to the ML lifecycle using Lightning App templates, without handling DIY infrastructure, cost management, scaling, and other headaches.
jbohnslav/mnist_viz
Simple visualizations of neural activation during mnist classification
jbohnslav/neural_networks_intro
Harvard PiN Nerd Club's introduction to neural networks.
jbohnslav/neural_renderer
A PyTorch port of the Neural 3D Mesh Renderer
jbohnslav/pytorch-image-models
PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, EfficientNetV2, NFNet, Vision Transformer, MixNet, MobileNet-V3/V2, RegNet, DPN, CSPNet, and more
jbohnslav/pytorch-ssim
pytorch structural similarity (SSIM) loss
jbohnslav/timelapse
jbohnslav/tinyimagenet_benchmarking
Timing script for one epoch of TinyImageNet. Can be used to evaluate performance of deep learning workstations or cloud machines.
jbohnslav/video_cropper
jbohnslav/vllm
A high-throughput and memory-efficient inference and serving engine for LLMs