Pinned Repositories
nf-100GMX-variant-summarizer
Nextflow pipeline used to count variants for the 100GMX project
bioconda-recipes
Conda recipes for the bioconda channel.
concatenate-sort-vcfs
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
ExtendAlign
A computational algorithm for delivering multiple global alignment results originated from local alignments.
nf-run-snpAD
nf-vcf2treemix
Pipeline that takes a pop vcf, runs and plot TreeMix
nf_tutorial
Selection-Signals-Tools
Repository with pipelines for running selection statistics and fully annotate signals.
VCF2PCP
A pipeline that makes Parallel Coordinate Plot from VCF.
jbv2's Repositories
jbv2/nf-vcf2treemix
Pipeline that takes a pop vcf, runs and plot TreeMix
jbv2/VCF2PCP
A pipeline that makes Parallel Coordinate Plot from VCF.
jbv2/nf_tutorial
jbv2/Selection-Signals-Tools
Repository with pipelines for running selection statistics and fully annotate signals.
jbv2/bioconda-recipes
Conda recipes for the bioconda channel.
jbv2/concatenate-sort-vcfs
jbv2/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
jbv2/ExtendAlign
A computational algorithm for delivering multiple global alignment results originated from local alignments.
jbv2/nf-run-snpAD
jbv2/jbv2
My personal repository.
jbv2/jbv2.github.io
website
jbv2/maf_filter
jbv2/minicurso_junio_2021
jbv2/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jbv2/nf-aims-frequencies
Pipeline to annotate frequencies of SNPs in gnomAD v3
jbv2/nf-ancestral-variation
A pipeline to get the ancestral annotations variants.
jbv2/nf-ancestral-vcf-prep
Pipeline to filter and merge ancestral vcfs from different samples.
jbv2/nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
jbv2/nf-format-dbSNP-gnomAD
Pipeline to prepare dbSNP VCF and tsv coverage grom gnomAD for analysis.
jbv2/nf-join-beds
A pipeline to join and tag beds from different files.
jbv2/nf-mre-postions-counts
Code for counting and giving positions of MRE snps.
jbv2/planets-TallerReproducibilidad
Repository for TallerdeReproducibilidad
jbv2/regulatory_elements
jbv2/regulatory_elements_pipeline
Ram's Tesis
jbv2/remove_split_normalize_only_snps
Filter vcfs
jbv2/run_admixtools
Nextflow pipeline (DSL2) that runs fstatistics with AdmixTools, taking different input types (VCF, PLINK, EIGENSTRAT).
jbv2/run_smartpca