jcw349

Bioinformatician focusing on pathogen genomics for disease surveillance and outbreak investigations

UC San DiegoCalifornia

Pinned Repositories

docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile0 0 00
nextclade_data
Datasets for https://github.com/nextstrain/nextclade
Language:Python0 0 00
WNV-ns-global
the repository used to build West Nile Virus for nextstrain including global data
Language:Python0 0 00
autolin
Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
Language:Python14 2 41
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile191 12 361119
usher
Ultrafast Sample Placement on Existing Trees
Language:C++123 12 15342

jcw349's Repositories

jcw349/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile0 0 00
jcw349/nextclade_data
Datasets for https://github.com/nextstrain/nextclade
Language:Python0 0 00
jcw349/WNV-ns-global
the repository used to build West Nile Virus for nextstrain including global data
Language:Python0 0 00