Pinned Repositories
bamfix
Strip /1 and /2 from BAM QNAME fields
chkcghub
Python script to check the existence, size, and checksum of files downloaded from the Cancer Genomics Hub (CGHub)
diffmotif
R tools for differential analysis of motif patterns
dptmethods
R package provides support to dptscan software pipeline
gencon
Output genomic context for a BED file of genomic ranges
genomesyncr
R package to sync and parse UCSC Genome Browser table data
goldmine
Annotate genomic contexts and discover functional element enrichments
methylaction
Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
jeffbhasin's Repositories
jeffbhasin/goldmine
Annotate genomic contexts and discover functional element enrichments
jeffbhasin/methylaction
Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
jeffbhasin/gencon
Output genomic context for a BED file of genomic ranges
jeffbhasin/genomesyncr
R package to sync and parse UCSC Genome Browser table data
jeffbhasin/bamfix
Strip /1 and /2 from BAM QNAME fields
jeffbhasin/chkcghub
Python script to check the existence, size, and checksum of files downloaded from the Cancer Genomics Hub (CGHub)
jeffbhasin/diffmotif
R tools for differential analysis of motif patterns
jeffbhasin/dptmethods
R package provides support to dptscan software pipeline
jeffbhasin/dptscan
Analysis pipeline for genome-wide de novo identification of differential enrichment events from next generation sequencing data
jeffbhasin/dptviz
Visualize differentially methylated regions detected by iDPT
jeffbhasin/handy
Handy R Functions
jeffbhasin/jeffbhasin.github.io
Documentation website for the Goldmine and MethylAction projects
jeffbhasin/methylaction_demo
Demo for the MethylAction R Package
jeffbhasin/pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
jeffbhasin/rtcga
jeffbhasin/snpscope
Compute overlap of SNPs with regulatory elements and export to CSV or the UCSC Genome Browser