jeffbhasin

jeffbhasin's Stars

• ryanmcdermott/clean-code-javascript

  Clean Code concepts adapted for JavaScript

  Language:JavaScript92k1.8k23412.3k

• rkt/rkt

  [Project ended] rkt is a pod-native container engine for Linux. It is composable, secure, and built on standards.

  Language:Go8.8k4201.6k883

• mozilla/Fira

  Mozilla's new typeface, used in Firefox OS

  Language:CSS5.1k126197308

• cytopia/devilbox

  A modern Docker LAMP stack and MEAN stack for local development

  Language:PHP4.4k113658656

• widdix/aws-cf-templates

  Free Templates for AWS CloudFormation

  Language:Java2.8k1171901.4k

• makeyourownneuralnetwork/makeyourownneuralnetwork

  Code for the Make Your Own Neural Network book

  Language:Jupyter Notebook2.4k145821.5k

• proot-me/proot

  chroot, mount --bind, and binfmt_misc without privilege/setup for Linux

  Language:C2.1k101248386

• randy3k/radian

  A 21 century R console

  Language:Python2.1k2643877

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k792.1k510

• broadinstitute/cromwell

  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

  Language:Scala1k1112.9k359

• Adriandmen/05AB1E

  A concise stack-based golfing language

  Language:Elixir7632312048

• calico/basenji

  Sequential regulatory activity predictions with deep convolutional neural networks.

  Language:Python41630172127

• AllenDowney/BayesMadeSimple

  Code for a tutorial on Bayesian Statistics by Allen Downey.

  Language:Jupyter Notebook347198209

• jlmelville/uwot

  An R package implementing the UMAP dimensionality reduction method.

  Language:R3272111331

• MariaNattestad/Ribbon

  A genome browser designed for complex structural variants and long reads.

  Language:JavaScript275156630

• deeptools/pyBigWig

  A python extension for quick access to bigWig and bigBed files

  Language:C222610150

• dpryan79/MethylDackel

  A (mostly) universal methylation extractor for BS-seq experiments.

  Language:C167811443

• ewindisch/dockenstack

  OpenStack Devstack on Docker

  Language:Shell154122158

• brentp/bwa-meth

  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

  Language:Python145137854

• dnanexus/dx-toolkit

  DNAnexus platform client libraries

  Language:Python9166086

• Zymo-Research/figaro

  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

  Language:Python83105326

• zhou-lab/biscuit

  BISulfite-seq CUI Toolkit

  Language:C6494124

• kdkorthauer/dmrseq

  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

  Language:R54106514

• dnanexus/dnanexus-example-applets

  Tutorials for app(let) developers:

  Language:Python2471313

• bentsherman/tesseract

  A tool for creating resource prediction models for scientific workflows

  Language:Jupyter Notebook142153

• jplatig/condor

  COmplex Network Description Of Regulators, an R package for bipartite network analysis

  Language:R11316

• Zymo-Research/miqScore16SPublic

  Repo for public-facing 16s miq score

  Language:HTML8465

• Zymo-Research/miqScoreShotgunPublic

  Repo for public-facing shotgun MIQ score

  Language:HTML6625

• zxl124/Ocean-toxin-prediction

  A data science project predicting risks of toxic domoic acid events in California coast region

  Language:Jupyter Notebook4103

• OpenGenomics/biobambam2-tool

  https://github.com/gt1/biobambam2

  2301