Pinned Repositories
BridgingRegistrations
Bridging registrations to convert between different Drosophila template brains
catnat
neuroanatomy toolbox – CATMAID extension functions
drvid
Access to DVID API
jlabvisuals
A repo for visual materials used in lab papers, presentations and posters
MakeAverageBrain
Make average template brains using CMTK’s avg_adm tool
MatlabSupport
Commonly used 3rd party source code for Matlab - sometimes with some minor fixes
NBLAST_figures
R Markdown documents used to produce figures for Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases
NBLAST_on-the-fly
Web application demonstrating NBLAST neuron similarity/search
pnaslatex
PNAS LaTeX and LyX templates
RANN
R package providing fast nearest neighbour search (wraps ANN library)
Jefferis Lab's Repositories
jefferislab/RANN
R package providing fast nearest neighbour search (wraps ANN library)
jefferislab/BridgingRegistrations
Bridging registrations to convert between different Drosophila template brains
jefferislab/NBLAST_on-the-fly
Web application demonstrating NBLAST neuron similarity/search
jefferislab/MakeAverageBrain
Make average template brains using CMTK’s avg_adm tool
jefferislab/jlabvisuals
A repo for visual materials used in lab papers, presentations and posters
jefferislab/LHlibrary
A R Shiny app for sharing and viewing lateral horn data
jefferislab/2018lhsplitcode
Analysis code for 2018 split paper
jefferislab/catnat
neuroanatomy toolbox – CATMAID extension functions
jefferislab/DrosophilidBridgingRegistrations
Bridging registrations to convert between different Drosophila species template brains
jefferislab/ImageJMacros
General Jefferis Lab ImageJ macros – e.g. split lsms
jefferislab/lhns
A repository for neuron data related to the fly lateral horn
jefferislab/MirrorRegistrations
Mirroring points in various Drosophila melanogaster template brain spaces
jefferislab/physplit.analysis
Packaged and versioned Analysis functions for Shahar's cells
jefferislab/2023_cVA_Taisz_Galili
Public code for Taisz, Galili et al. (2023)
jefferislab/drvid
Access to DVID API
jefferislab/jimpipeline
jefferislab/skeleton-to-MIP
jefferislab/bftools
jefferislab/bridging_on-the-fly
jefferislab/familynblast
NBLAST to identify neuron families and subfamilies
jefferislab/flybrainenv
Shared login scripts and other configuration info for the lmb linux cluster
jefferislab/flycircuitreg
jefferislab/flywatch
Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig
jefferislab/LHN_Tracings
jefferislab/lhnsold
Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster
jefferislab/MicroManagerStrobePlugin
A plugin developed for MicroManager / ImageJ to coordinate pulsed LED illumination with image acquisition
jefferislab/NBLAST_clusters_online
Explore clusters from Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, online in 3D
jefferislab/nblastwwwjb
Jekyll bootstrap version of nblast website
jefferislab/physplitdata
shahar's versioned raw data and db dump
jefferislab/V2LH-R
Some analysis associated with studies of MB-V2a neurons