Pinned Repositories
BridgingRegistrations
Bridging registrations to convert between different Drosophila template brains
catnat
neuroanatomy toolbox – CATMAID extension functions
drvid
Access to DVID API
jlabvisuals
A repo for visual materials used in lab papers, presentations and posters
MakeAverageBrain
Make average template brains using CMTK’s avg_adm tool
MatlabSupport
Commonly used 3rd party source code for Matlab - sometimes with some minor fixes
NBLAST_figures
R Markdown documents used to produce figures for Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases
NBLAST_on-the-fly
Web application demonstrating NBLAST neuron similarity/search
pnaslatex
PNAS LaTeX and LyX templates
RANN
R package providing fast nearest neighbour search (wraps ANN library)
Jefferis Lab's Repositories
jefferislab/pnaslatex
PNAS LaTeX and LyX templates
jefferislab/MatlabSupport
Commonly used 3rd party source code for Matlab - sometimes with some minor fixes
jefferislab/NBLAST_figures
R Markdown documents used to produce figures for Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases
jefferislab/FruCloneClustering
jefferislab/OctaveSupport
Octave support code for FruCloneClustering (currently just a wrapper for ANN nearest neighbour library)
jefferislab/CacheroOstrovsky2010SupplementalData
Repository to manage supplemental data for Cachero, Ostrovsky et al. Sexual Dimorphism in the Fly Brain (Current Biology) http://dx.doi.org/10.1016/j.cub.2010.07.045
jefferislab/DrosophilidDBM
R code for Deformation Based Morphometry across Drosophilid species
jefferislab/Rgridengineswarm
Simple R tools for creating and managing swarms of workers on Grid Engine
jefferislab/Cross_Species_Examples
cross species examples for NBLAST paper originally based on nat.examples code
jefferislab/dpscanon
set of neurons (in dotprops format) required to build NBLAST figures
jefferislab/FlyLight
utility code for registering/analysing flylight enhancer trap image data
jefferislab/LHN_Tracings
jefferislab/NBLAST_clusters_online
Explore clusters from Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, online in 3D
jefferislab/ODDXOP
Igor XOP to control Odour Delivery Device
jefferislab/TestRegRepo
jefferislab/VFB
Virtual Fly Brain