jeliason
Bioinformatics PhD student working in computational and statistical histopathology at the University of Michigan
University of Michigan
Pinned Repositories
AgentNet
Pytorch implementation of AgentNet, which is designed for reveal hidden interactions and predict future dynamics of the unknown complex system.
AWS-JPL-OSR-Challenge
Official repo of the AWS-JPL Open Source Rover challenge
b545_g4_project
bioinf593_final_project
Final project for Bioinf 593: ML in Comp Bio
brain_stat_graph
Experiments in statistics of networks, using brain connectivity graphs
hippo
Using state space models on neural spiking data in the hippocampus
school_projects
Several notable projects done while at Northwestern
scrna_analysis
A repository containing my investigations into single-cell RNAseq analysis, especially as applied to cancer
spatialkmeans
Single-cell spatial omics clustering, incorporating the physical distance between cells into the omics distance. This penalizes cells that are further away from being in the same cluster.
DIMPLE
jeliason's Repositories
jeliason/b545_g4_project
jeliason/spatialkmeans
Single-cell spatial omics clustering, incorporating the physical distance between cells into the omics distance. This penalizes cells that are further away from being in the same cluster.
jeliason/AgentNet
Pytorch implementation of AgentNet, which is designed for reveal hidden interactions and predict future dynamics of the unknown complex system.
jeliason/bioinf593_final_project
Final project for Bioinf 593: ML in Comp Bio
jeliason/hippo
Using state space models on neural spiking data in the hippocampus
jeliason/scrna_analysis
A repository containing my investigations into single-cell RNAseq analysis, especially as applied to cancer
jeliason/cancer_immune_modeling
jeliason/causality-lab
Causal discovery algorithms and tools for implementing new ones
jeliason/csbjDeepLearning
Deep Learning Predicts Microbial Interactions from Self-organized Spatiotemporal Patterns
jeliason/dyn-gfn
DynGFN: Bayesian Dynamic Causal Discovery using Generative Flow Networks
jeliason/dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
jeliason/gnn-model-explainer
gnn explainer
jeliason/HAL
HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs
jeliason/histocartography
Histocartography is a framework bringing together AI and Digital Pathology
jeliason/hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
jeliason/mgpp_TME
jeliason/nbhdUtils
jeliason/nest-simulator
The NEST simulator
jeliason/patho-quant-explainer
Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"
jeliason/PhysiCell-Studio
PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.
jeliason/ppjsdm
Point process joint species distribution models
jeliason/ppjsdm_on_datasets
Using the ppjsdm package on datasets.
jeliason/python-glmnet
A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.
jeliason/QSPIO-TNBC
This repository contains the latest QSP platform for TNBC developed by the Popel Systems Biology Laboratory
jeliason/rgeyer
Simulate Geyer's saturation process. Aimed for multi-variate and multi-scale versions.
jeliason/rslurm
Submit R code to a Slurm cluster
jeliason/sbi
Simulation-based inference in PyTorch
jeliason/SERGIO
A simulator for single-cell expression data guided by gene regulatory networks
jeliason/shiny-reticulate-app
An end-to-end tutorial creating an R Shiny app that uses the reticulate package with Python 3
jeliason/SpatialPack
Tools for assessment the association between two spatial processes