Pinned Repositories
CD_Metabolomics_Datavis
Fasta_Reader
Standard Fasta Reader Built in Python
iapi
Instrument Application Programming Interface
Mass.Standard.Viewer
A Standard viewer for Proteome discoverer 2.2 peptide ID data. It should be used to visualize the shift in retention time, delta M and Xcorr value between standard runs
Partial-Seq-Search
Match Partial peptide Sequences to parent protein of a fasta file
probocor
correlation analysis of protein increases and metabolite increases between samples
proteomics-metadata-standard
The Sample to Data file format for Proteomics
R.I.D.A.R
This little piece of code filters through all of the MS1 scans of an MGF file to identify if all of the associated reporter ions are present. If the reporter ions are present then a fold change identification is run. If the fold change is higher than the set threshold, the entire MS1 will be written to a new MGF file that decreases the search time and file size when compared to the original file. This ensures that scans that cannot be quantified are removed and the overall file is de-cluttered.
Read_PD_Output
Reads the tab spearated text converted PD output file into the basic data representation
sps_vs_Isolation
Plotting the SPS% Accuracy vs the % Isolation Interference
jenkinsc11's Repositories
jenkinsc11/R.I.D.A.R
This little piece of code filters through all of the MS1 scans of an MGF file to identify if all of the associated reporter ions are present. If the reporter ions are present then a fold change identification is run. If the fold change is higher than the set threshold, the entire MS1 will be written to a new MGF file that decreases the search time and file size when compared to the original file. This ensures that scans that cannot be quantified are removed and the overall file is de-cluttered.
jenkinsc11/Partial-Seq-Search
Match Partial peptide Sequences to parent protein of a fasta file
jenkinsc11/probocor
correlation analysis of protein increases and metabolite increases between samples
jenkinsc11/CD_Metabolomics_Datavis
jenkinsc11/Fasta_Reader
Standard Fasta Reader Built in Python
jenkinsc11/iapi
Instrument Application Programming Interface
jenkinsc11/Mass.Standard.Viewer
A Standard viewer for Proteome discoverer 2.2 peptide ID data. It should be used to visualize the shift in retention time, delta M and Xcorr value between standard runs
jenkinsc11/proteomics-metadata-standard
The Sample to Data file format for Proteomics
jenkinsc11/Read_PD_Output
Reads the tab spearated text converted PD output file into the basic data representation
jenkinsc11/sps_vs_Isolation
Plotting the SPS% Accuracy vs the % Isolation Interference