jenkinsc11's Stars
smith-chem-wisc/MetaMorpheus
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
rubenturner/ProteoformWarehouse
pwilmart/annotations
GUI tool to add rich annotations to PAW summary files from Swiss-Prot flat text files.
bigbio/proteomics-sample-metadata
The Proteomics Experimental Design file format: Standard for experimental design annotation
shuzhao-li-lab/Notebooks-computational-metabolomics
Notebooks in computational metabolomics
kusterlab/prosit
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
crazyguitar/pysheeet
Python Cheat Sheet
orsburn/LCMSMethods
The Git Account of LCMSMethods.org
openvax/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
GoodlettLab/xComb
A Cross-Linked Peptide Database Approach to Protein−Protein Interaction Analysis
PGB-LIV/php-ms-example
php-ms demo suite and examples of usage.
PRIDE-Toolsuite/pride-inspector
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
bittremieux/spectrum_utils
Python package for efficient mass spectrometry data processing and visualization
jmchilton/pymz5
A python library to access mz5 mass spectrometry data files
Bioinformatics-User-Forum/SIG
Bioinformatics Special Interest Group
Chris7/pythomics
A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.
compomics/moFF
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
sahirbhatnagar/manhattanly