jennieli421

jennieli421's Stars

• welch-lab/liger

  R package for integrating and analyzing multiple single-cell datasets

  Language:R37178

• tanlongzhi/dip-c

  Tools to analyze Dip-C (or other 3C/Hi-C) data

  Language:Python5618

• christopher-vollmers/C3POa

  Computational pipeline for calling consensi on R2C2 nanopore data

  Language:Python66

• andrewprzh/ngs-analysis

  Various scripts for sequencing data analysis

  Language:Python51

• tansey-lab/pyro_tutorial

  Language:Python3

• AnjanaSenanayake/DeepSelectNet

  DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.

  Language:C14

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k341

• roblanf/minion_qc

  Quality control for MinION sequencing data

  Language:R20842

• gpt-engineer-org/gpt-engineer

  Specify what you want it to build, the AI asks for clarification, and then builds it.

  Language:Python51.3k6.7k

• rrwick/MinION-desktop

  Scripts and programs for the Holt Lab's MinION desktop

  Language:Python323

• careenfoord/scisorATAC

  Language:R1

• crazyhottommy/scclusteval

  Single Cell Cluster Evaluation

  Language:R8313

• hasindu2008/slow5tools

  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

  Language:C905

• LooseLab/readfish

  CLI tool for flexible and fast adaptive sampling on ONT sequencers

  Language:Python16230

• noush-joglekar/scisorseqr

  scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

  Language:R359

• cadenmcquillen/FIHTD

  Language:HTML2

• skovaka/UNCALLED

  Raw nanopore signal mapper that enables real-time targeted sequencing

  Language:C++51543

• nanoporetech/read_until_api

  Read Until client library for Nanopore Sequencing

  Language:Python10213

• marbl/CHM13

  The complete sequence of a human genome

  87996

• krumsieklab/maplet

  R statistical toolbox for metabolomics

  Language:R176

• katie-hoemann/granularityDiversity

  Language:MATLAB1

• dptools/process_audio_diary

  Code for QC, feature extraction, and visualization of daily patient audio diaries

  Language:Python23

• fivethirtyeight/data

  Data and code behind the articles and graphics at FiveThirtyEight

  Language:Jupyter Notebook16.7k11k

• cs61/cs61-f20-psets

  CS 61 problem sets for 2020

  Language:C++1114

• cs61/cs61-lectures

  CS61 lecture material

  Language:C++8673