jenniferliddle
A software engineer since the days of punched cards and paper tape. My first program was written on an ICL mainframe and my first computer was a Commodore PET
@wtsi-npg @samtools Cambridgeshire
Pinned Repositories
arduino
Various bits of arduino code
bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
baton
iRODS client programs and API
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bitsand
Bitsand is an online booking system for live role play events. It was initially written for the Lions faction in the LT system, but it can now be used by any faction or guild.
c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
core
:house_with_garden: Open source home automation that puts local control and privacy first.
hydranet
Remote telemetry sending data back to a central server
jsquared
Miscellanous scripts and programs
bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
jenniferliddle's Repositories
jenniferliddle/hydranet
Remote telemetry sending data back to a central server
jenniferliddle/arduino
Various bits of arduino code
jenniferliddle/bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
jenniferliddle/baton
iRODS client programs and API
jenniferliddle/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
jenniferliddle/bitsand
Bitsand is an online booking system for live role play events. It was initially written for the Lions faction in the LT system, but it can now be used by any faction or guild.
jenniferliddle/c-maint
Maintenance scripts used with the htslib/samtools/bcftools repositories
jenniferliddle/core
:house_with_garden: Open source home automation that puts local control and privacy first.
jenniferliddle/jsquared
Miscellanous scripts and programs
jenniferliddle/gps_compare
Raspberry Pi python to take in USB GPS data and Bluetooth GPS data and save them
jenniferliddle/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
jenniferliddle/htslib
C library for high-throughput sequencing data formats
jenniferliddle/ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
jenniferliddle/ml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systems
jenniferliddle/ngr2ll
C code to convert from National Grid Reference to Latitude and Longitude
jenniferliddle/npg_conda
NPG Conda recipes and tools
jenniferliddle/npg_irods
Tools for managing HTS (BAM and CRAM) format files in iRODS.
jenniferliddle/npg_ml_warehouse
Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
jenniferliddle/npg_qc
QC checks and metrics for Illumina NGS data
jenniferliddle/npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
jenniferliddle/npg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
jenniferliddle/p4
Process and Pipe Pipeline Panacea
jenniferliddle/pb_calibration
Filter and calibration programs for Illumina BAM files
jenniferliddle/perl-irods-wrap
Perl iRODS Client Wrapper Library
jenniferliddle/remote_antenna_tuner
Pi Pico W providing a web page controlling stepper motors connected to a remote manual ATU
jenniferliddle/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
jenniferliddle/samtools_container
Scripts to create a docker container for samtools
jenniferliddle/testRange
python code to steer an az-el antenna and record sign al levels
jenniferliddle/wr
High performance Workflow Runner
jenniferliddle/www.htslib.org
The http://www.htslib.org/ web site