Pinned Repositories
analysis
Analysis of inference methods on standard population models
discsim
Efficient coalescent simulations in a spatial continuum
ercs
Coalescent simulations in continuous space
msprime-model-errors
A short manuscript describing some modelling errors made with msprime
msprime-paper
Comparisons of simulators for the msprime paper
phylokit
Phylogenetics toolkit for the PyData Ecosystem
python-c-api-demo
A demo of the Python C API for CodeMonkeys
sc2ts
Infer a succinct tree sequence from SARS-COV-2 variation data
sc2ts-paper
jeromekelleher's Repositories
jeromekelleher/msprime-model-errors
A short manuscript describing some modelling errors made with msprime
jeromekelleher/ga4gh-variant-sim
Simulations for benchmarking large-scale variant stores
jeromekelleher/lsts-paper
Li and Stephens on tree sequences
jeromekelleher/abstract-book
Scripts for generating the abstract book
jeromekelleher/bioconda-recipes
Conda recipes for the bioconda channel.
jeromekelleher/conference-website-template
Simple HTML/CSS website template for a small academic conference
jeromekelleher/demes
Tools for describing and manipulating demographic models.
jeromekelleher/demes-feedstock
A conda-smithy repository for demes.
jeromekelleher/demes-paper
Manuscript for the demes package for demographic model specification.
jeromekelleher/demes-spec
demes' data model specification
jeromekelleher/dynamic-ts
Dynamic tree sequences for forward simulations
jeromekelleher/fastmac
jeromekelleher/hoverboard
Conference website template
jeromekelleher/jupyter-book
Build interactive, publication-quality documents from Jupyter Notebooks
jeromekelleher/manuscript
PopSim consortium manuscript
jeromekelleher/msprime-1.0-paper
Publication describing msprime 1.0
jeromekelleher/msprime-feedstock
A conda-smithy repository for msprime.
jeromekelleher/scikit-allel
A Python package for exploring and analysing genetic variation data
jeromekelleher/sgkit-plink
PLINK IO implementations for sgkit
jeromekelleher/SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
jeromekelleher/stdpopsim-1
A library of standard population genetic models
jeromekelleher/tree-counting-paper
Paper describing a combinatorial approach to counting species tree topologies and applications
jeromekelleher/tskit-build-examples
Examples of how to build projects using tskit.
jeromekelleher/tskit-feedstock
A conda-smithy repository for tskit.
jeromekelleher/tskit-paper
jeromekelleher/tszip
Compression utilities for tree sequences
jeromekelleher/tszip-feedstock
A conda-smithy repository for tszip.
jeromekelleher/tutorials
A set of tutorials for msprime and tskit.
jeromekelleher/website
Personal website
jeromekelleher/workshops
A collection of workshop material