Pinned Repositories
ab12phylo
AB12PHYLO: An integrated easy-to-use pipeline for ML phylogenetic tree inference
ABC-FDSS
ABC framework based on the distribution of segregationg sites between populations and Random Forest to perform model choice
admixture_cv_sum
[DEPRECATED] Summarizes the output of cross-validation values for multiple runs of admixture
AftrRAD
AftrRAD is a bioinformatic pipeline for analyzing GBS data such as those generated with RADseq.
AGAT
Another Gtf/Gff Analysis Toolkit
Al2PrunedTree
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
alvis
AMAS
Calculate summary statistics and manipulate multiple sequence alignments
AMP_alignment_process
A workflow and toolkit of perl scripts to manipulate multiple sequence alignments
testb
this is a test
jiangchb's Repositories
jiangchb/AMAS
Calculate summary statistics and manipulate multiple sequence alignments
jiangchb/BIND_annotation
Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
jiangchb/biotools
A list of useful bioinformatics resources
jiangchb/build
dockerfiles
jiangchb/covviz
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
jiangchb/fast-pptx
Quickly make a PowerPoint presentation from a directory of URLs, images, PDFs, CSV files, and code snippets.
jiangchb/fqcheck
fqcheck: A new simple and efficient software to stat base and quality distribution of fq file
jiangchb/GBKviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
jiangchb/GBS-SNP-CROP
GBS SNP Calling Reference Optional Pipeline
jiangchb/GenErode
研究濒危和灭绝物种有害突变的简易流程
jiangchb/GeneSyntenyPipeline
jiangchb/Genome-annotation-pipeline
Genome annotation
jiangchb/GenomeSyn-prepare
We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
jiangchb/graphlan
High-quality circular representations of taxonomic and phylogenetic trees
jiangchb/itolapi
Python API for the Interactive Tree of Life (iTOL)
jiangchb/LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
jiangchb/maize_NAM
Pipeline and scripts for maize NAM line annotation and analysis
jiangchb/mInDel
a reference genome-independent next-generation tool for cumulative InDel marker discovery
jiangchb/MitoFinder
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
jiangchb/NGenomeSyn
Any Way to Show Multi genomic Synteny
jiangchb/OGAP
OGAP: Organelle Genome Annotation Pipeline
jiangchb/OrthoFinder
Phylogenetic orthology inference for comparative genomics
jiangchb/phylotree.js
Interactive viewer of phylogenetic trees
jiangchb/physalia_adaptation_course
population genomics
jiangchb/poseidon
PoSeiDon: positive selection detection and recombination analysis pipeline
jiangchb/PsiCLASS
Simultaneous multi-sample transcript assembler for RNA-seq data
jiangchb/SSR2Marker
An integrated pipeline for identification of SSR markers
jiangchb/SSRGT
SSRGT is a software used to genotype and SSR calling across a hybrid population with genome resequencing data.
jiangchb/vcf2primer
Extract variants from the vcf file and design primers that sandwich the variants.
jiangchb/VESPA
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses