Pinned Repositories
ab12phylo
AB12PHYLO: An integrated easy-to-use pipeline for ML phylogenetic tree inference
ABC-FDSS
ABC framework based on the distribution of segregationg sites between populations and Random Forest to perform model choice
admixture_cv_sum
[DEPRECATED] Summarizes the output of cross-validation values for multiple runs of admixture
AftrRAD
AftrRAD is a bioinformatic pipeline for analyzing GBS data such as those generated with RADseq.
AGAT
Another Gtf/Gff Analysis Toolkit
Al2PrunedTree
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
alvis
AMAS
Calculate summary statistics and manipulate multiple sequence alignments
AMP_alignment_process
A workflow and toolkit of perl scripts to manipulate multiple sequence alignments
testb
this is a test
jiangchb's Repositories
jiangchb/alvis
jiangchb/bHLH_annotator
automatic annotation of bHLH gene family in plants
jiangchb/BnaSNPDB
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
jiangchb/CandiHap
A haplotype analysis toolkit for natural variation study.
jiangchb/chromeister
A dotplot generator for large chromosomes
jiangchb/clinker
Gene cluster comparison figure generator
jiangchb/CMplot
📊 Circular and Rectangular Manhattan Plot
jiangchb/DrukBam
jiangchb/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
jiangchb/gfanno
Gene Family Annotation Workflow
jiangchb/ggcoverage
Visualize and annotate genomic coverage with ggplot2
jiangchb/gw
Genome browser and variant annotation
jiangchb/karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
jiangchb/KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
jiangchb/MTX_model
R package for differential expression analysis in metatranscriptomics
jiangchb/MYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
jiangchb/NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
jiangchb/NucFreq
jiangchb/paf2dotplot
Draw a dot plot from a paf alignment
jiangchb/PBBtools
collection of mini tools for the BioinfToolServer
jiangchb/phyd3
Phylogenetic tree viewer based on D3.js
jiangchb/RNAseq_workflow
jiangchb/smashpp
Find and visualize rearrangements in DNA sequences
jiangchb/snipit
snipit: summarise snps relative to your reference sequence
jiangchb/SomeScript-epcr
There are some useful scripts.
jiangchb/STAGES
jiangchb/T-LOC
jiangchb/trackplot
Generate IGV style locus tracks from bigWig files in R
jiangchb/VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
jiangchb/vcf2circos
python plotly Circos from VCF