Pinned Repositories
ab12phylo
AB12PHYLO: An integrated easy-to-use pipeline for ML phylogenetic tree inference
ABC-FDSS
ABC framework based on the distribution of segregationg sites between populations and Random Forest to perform model choice
admixture_cv_sum
[DEPRECATED] Summarizes the output of cross-validation values for multiple runs of admixture
AftrRAD
AftrRAD is a bioinformatic pipeline for analyzing GBS data such as those generated with RADseq.
AGAT
Another Gtf/Gff Analysis Toolkit
Al2PrunedTree
Prunes a given newick tree file to keep only taxa present in a given sequence alignment (FASTA format)
alvis
AMAS
Calculate summary statistics and manipulate multiple sequence alignments
AMP_alignment_process
A workflow and toolkit of perl scripts to manipulate multiple sequence alignments
testb
this is a test
jiangchb's Repositories
jiangchb/AGAT
Another Gtf/Gff Analysis Toolkit
jiangchb/bamdst
a lightweight bam file depth statistical tool
jiangchb/bioToolKit
My NGS toolkit for every-day use.
jiangchb/free
翻墙、免费翻墙、免费科学上网、免费节点、免费梯子、免费ss/v2ray/trojan节点、蓝灯、谷歌商店、翻墙梯子
jiangchb/GAAS
Genome Assembly and Annotation Service code
jiangchb/GeneExpressionPlots
A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).
jiangchb/GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
jiangchb/GenoVi
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
jiangchb/geta
jiangchb/ggstatsplot
Enhancing `{ggplot2}` plots with statistical analysis 📊🎨📣
jiangchb/GraphBio
GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
jiangchb/manhplot
Manhattan++
jiangchb/MFEprimer-3.0
PCR Primer Quality Control
jiangchb/micro-primers
jiangchb/miniprot
Align proteins to genomes with splicing and frameshift
jiangchb/mito_recombinator
A pipeline used to analyze repeat-mediated recombination for plant mitogenome
jiangchb/MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
jiangchb/MTX_model
R package for differential expression analysis in metatranscriptomics
jiangchb/phyd3-example-app
An example app demonstrating the use of PhyD3
jiangchb/pixy
Software for painlessly estimating average nucleotide diversity within and between populations
jiangchb/pyGenomeViz
A genome visualization python package for comparative genomics
jiangchb/rnaseq
RNA-Seq pipeline
jiangchb/Searchlight2
Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
jiangchb/shinyCircos-V2.0
an R/Shiny application for interactive creation of Circos plot
jiangchb/SSRgenotyper
find SSRs in a population
jiangchb/syri
Synteny and Rearrangement Identifier
jiangchb/TEsorter
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
jiangchb/tmerge
Merge transcriptome read-to-genome alignments into non-redundant transcript models
jiangchb/vcfpop
jiangchb/yass
genomic alignment similarity search tool