jianshu93

jianshu93's Stars

• lapce/lapce

  Lightning-fast and Powerful Code Editor written in Rust

  Language:Rust34.9k1851.9k1.1k

• bytedance/monoio

  Rust async runtime based on io-uring.

  Language:Rust4.1k49101227

• indradb/indradb

  A graph database written in rust

  Language:Rust2.2k37114113

• neuronika/neuronika

  Tensors and dynamic neural networks in pure Rust.

  Language:Rust1.1k274554

• lmcinnes/pynndescent

  A Python nearest neighbor descent for approximate nearest neighbors

  Language:Python90814138106

• Lokathor/tinyvec

  Just, really the littlest Vec you could need. So smol.

  Language:Rust657119549

• rust-lang/packed_simd

  Portable Packed SIMD Vectors for Rust standard library

  Language:Rust6073217174

• constellation-rs/constellation

  Distributed programming for Rust.

  Language:Rust574131024

• constellation-rs/amadeus

  Harmonious distributed data analysis in Rust.

  Language:Rust476193025

• quickwit-oss/bitpacking

  SIMD algorithms for integer compression via bitpacking. This crate is a port of a C library called simdcomp.

  Language:Rust279191730

• daac-tools/daachorse

  🐎 A fast implementation of the Aho-Corasick algorithm using the compact double-array data structure in Rust.

  Language:Rust2094614

• waveygang/wfmash

  base-accurate DNA sequence alignments using WFA and mashmap3

  Language:C++18096720

• kaist-ina/BWA-MEME

  BWA-MEME: Faster BWA-MEM2 using learned-index

  Language:C++11492814

• dcjones/coitrees

  A very fast interval tree data structure

  Language:Rust113898

• pirovc/ganon

  ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

  Language:Python9447113

• mrvollger/rustybam

  bioinformatics toolkit in rust

  Language:Rust833142

• dncc/qpick

  Search for similar short strings

  Language:Rust53708

• vorot/roots

  Library of well known algorithms for numerical root finding.

  Language:Rust5021918

• CMU-SAFARI/BLEND

  BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

  Language:C421264

• mrkline/piz-rs

  Parallelized zip archive reading

  Language:Rust363812

• davidMcneil/mnist

  MNIST data set parser https://crates.io/crates/mnist

  Language:Rust202811

• uzushino/rs-annoy

  spotify/annoy bindings for Rust.

  Language:C++18123

• knncolle/knncolle

  Collection of KNN algorithms in C++

  Language:C++13465

• uzushino/little-annoy

  A minimal implementation of spotify/annoy in pure rust

  Language:Rust11311

• pjedge/rust-spoa

  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.

  Language:Rust10313

• bionitio-team/bionitio-rust

  Demonstrating best practices for bioinformatics command line tools

  Language:Rust9711

• frjnn/adqselect

  Rust nth_element implementation that leverages Andrei Alexandrescu's Adaptive Quickselect algorithm.

  Language:Rust4201

• frjnn/floydrivest

  Rust's nth_element implementation using the Floyd-Rivest algorithm.

  Language:Rust4200

• jeanmanguy/multi-seq-align

  A crate to manipulate multiple sequences alignments in Rust.

  Language:Rust4112

• LTLA/yaumap

  Yet Another UMAP package for R

  Language:C++4411