jianshu93

jianshu93's Stars

• pgvector/pgvector

  Open-source vector similarity search for Postgres

  Language:C13.3k107632626

• sindresorhus/Gifski

  🌈 Convert videos to high-quality GIFs on your Mac

  Language:Swift7.9k61162298

• dragostis/chili

  Rust port of Spice, a low-overhead parallelization library

  Language:Rust583438

• jenniferlu717/KrakenTools

  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

  Language:Python325118691

• royerlab/napari-chatgpt

  A napari plugin to process and analyse images with chatGPT!

  Language:CSS267122827

• labgem/PPanGGOLiN

  Build a partitioned pangenome graph from microbial genomes

  Language:Python2461314631

• DBAIWangGroup/nns_benchmark

  Benchmark of Nearest Neighbor Search on High Dimensional Data

  Language:C++20516853

• onecodex/rust-bfield

  B-field implementation in Rust

  Language:Rust2051594

• BGI-shenzhen/PopLDdecay

  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

  Language:C++188132255

• lskatz/mashtree

  :deciduous_tree: Create a tree using Mash distances

  Language:Perl157138225

• PDB-REDO/alphafill

  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

  Language:C++9374819

• PacificBiosciences/HiPhase

  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

  Language:Rust727384

• qiyunzhu/woltka

  Woltka: a versatile meta'omic data classifier

  Language:Python7197925

• GTmac/FastRP

  Code for the CIKM 2019 Paper "Fast and Accurate Network Embeddings via Very Sparse Random Projection"

  Language:Jupyter Notebook55556

• bittremieux/ANN-SoLo

  Spectral library searching using approximate nearest neighbor techniques.

  Language:Jupyter Notebook4283619

• TravisWheelerLab/AvxWindowFmIndex

  A fast, AVX2 and ARM Neon accelerated FM index library

  Language:C316195

• LucaCappelletti94/hyperloglog-rs

  A Rust implementation of HyperLogLog trying to be parsimonious with memory.

  Language:Rust30101

• baku4/sigalign

  A Similarity-Guided Alignment Algorithm

  Language:Rust26414

• tolkit/gfatk

  A plant organellar Graphical Fragment Assembly toolkit

  Language:Rust164151

• axiomhq/hypertwobits

  HyperTwoBits implementation

  Language:Rust12423

• cberner/xxh3

  Rust implementation of the XXH3 hash function

  Language:Rust10222

• khodor14/Cdbgtricks

  Cdbgtricks is a modular tool for updating a compacted de Bruijn Graph.

  Language:C++86112

• AdamCicherski/AlfaPang

  Language:C++5

• Shamir-Lab/4CAC

  Language:Python5421

• rderelle/skalo

  indels and complex variants prediction from SKA skf files

  Language:Rust4201

• sundy-li/simple_hll

  A simple HyperLogLog implementation in rust

  Language:Rust3312

• broadinstitute/abpoa-rs

  Rust bindings for abPOA

  Language:Rust2202

• hcdenbakker/colorid_bv

  Colorid using a new BIGSI implementation

  Language:Rust2311

• sebschmi/omnitigs-rs

  Implementations of omnitig related algorithms.

  Language:Rust1201

• YuhaoZhangwow/SMeta

  Language:C++110