PDB-REDO/alphafill

Issues

• ctest failures

  #47 opened 4 months ago by meh47336
  2

• Yasara ERRoR when analysis interactions between proteins and small molecules

  #46 opened 4 months ago by lightcone233
  1

• Coloring by pLDDT

  #33 opened 9 months ago by prihoda
  1

• Error reading file

  #43 opened 9 months ago by AlessioDelConte
  1

• Do we need a blast index file or just a fasta file for --pdb-fasta? Need help here.

  #45 opened 9 months ago by Yang-Wang-2020
  10

• Installation in docker

  #27 opened 2 years ago by Nick-Mul
  3

• Questions about the "selection of chemical compounds"

  #44 opened 9 months ago by leaves520
  3

• Documentation about the --pae-file option

  #42 opened 9 months ago by phupe
  2

• Warning: Missing atom for atom ID

  #41 opened 9 months ago by DamienWaits
  1

• "Query should have returned exactly one row" Error

  #40 opened 10 months ago by DamienWaits
  2

• Error when processing 2ONG for nohd >> max-ligand-to-polymer-atom-distance: unknown option

  #39 opened a year ago by eporetsky
  1

• Alphafill can't find pdb files albeit finding them when generating the pdb-id-list

  #37 opened a year ago by sadiogo
  16

• Remove mrc dependency from alphafill

  #34 opened a year ago by YoshitakaMo
  1

• [Suggestion] An easy implementation of structure similarity search using the DASH database

  #38 opened a year ago by sadiogo
  2

• Problems running prepare-pdb-list

  #32 opened a year ago by abiadak3
  15

• Cannot link libraries to target (alphafill executable)

  #36 opened a year ago by sadiogo
  5

• Alphafill doesn't accept PDB files created by Colabfold

  #25 opened a year ago by Phreely
  16

• compiling of alphafill fails with "variable CIFPP_SHARE_DIR does not exist"

  #35 opened a year ago by schloegl
  7

• Installing issue on CentOS 7 system

  #24 opened 2 years ago by syx2017-bot
  4

• Fails to compile at utilities.hpp

  #31 opened 2 years ago by abiadak3
  6

• libzeep is not able to build

  #30 opened 2 years ago by rytakahas
  3

• libzeep is not able to build

  #29 opened 2 years ago by rytakahas
  1

• Where are the selection of chemical compounds stored?

  #28 opened 2 years ago by r-krishna
  2

• rsync download of the PDB-REDO DB not working

  #26 opened 2 years ago by roger-boop
  3

• Alphafill usage

  #23 opened 2 years ago by lukab86
  3

• iNEXT-Discovery logo

  #22 opened 2 years ago by drlemmus
  1

• requirements: issues with setup

  #9 opened 2 years ago by ccbiozhaw
  4

• Error building AlphaFill on Ubuntu 20.04.5 LTS

  #21 opened 2 years ago by Vedasheersh
  2

• CCP4 dependency

  #18 opened 2 years ago by mf-rug
  4

• Conda package

  #20 opened 2 years ago by steff1088
  2

• UNL ligand crash

  #19 opened 2 years ago by mf-rug
  4

• cif input problems

  #12 opened 2 years ago by mf-rug
  12

• Use foldseek to find structures?

  #8 opened 2 years ago by hmms117
  3

• [Question] How to get the FastA formatted file for all sequences in this databank?

  #17 opened 2 years ago by agdiaz
  2

• SyntaxError: Unexpected token '<', "<!DOCTYPE "... is not valid JSON

  #16 opened 2 years ago by jeromeRlon
  2

• Error executing mrc: Could not open data file

  #15 opened 2 years ago by Jorisvansteenbrugge
  3

• Install Issues

  #14 opened 2 years ago by WillExeter
  1

• Running AlphaFill locally on one's own AlphaFold models

  #13 opened 2 years ago by eric-jm-lang
  1

• Format error in output CIF

  #11 opened 2 years ago by mf-rug
  3

• mmCIF dictionary

  #10 opened 2 years ago by multimeric
  3

• Feature request for transplant contacts

  #2 opened 3 years ago by drlemmus
  2

• Update JSON schema to incorprate contact analysis

  #4 opened 3 years ago by drlemmus
  0

• YASARA refine

  #7 opened 3 years ago by JinyuanSun
  4

• important homologs seem to be missing

  #6 opened 3 years ago by esbenfriis
  1

• Q13315 Issues

  #5 opened 3 years ago by multimeric
  5

• Add descriptive names for contacts

  #3 opened 3 years ago by drlemmus
  1

• Not clear where ligand files should be located.

  #1 opened 3 years ago by tkella47
  1