Pinned Repositories
AlphaBridge
alphafill
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
cif-tools
A suite of programs to manipulate and examine mmCIF files
density-fitness
Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
dssp
Application to assign secondary structure to proteins
dssp-server
Web server implementation for DSSP
libcifpp
Library containing code to manipulate mmCIF and PDB files
pdb-redo-builder
Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS
platonyzer
tortoize
Application to calculate ramachandran z-scores
PDB-REDO's Repositories
PDB-REDO/dssp
Application to assign secondary structure to proteins
PDB-REDO/alphafill
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
PDB-REDO/libcifpp
Library containing code to manipulate mmCIF and PDB files
PDB-REDO/AlphaBridge
PDB-REDO/density-fitness
Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
PDB-REDO/cif-tools
A suite of programs to manipulate and examine mmCIF files
PDB-REDO/dssp-server
Web server implementation for DSSP
PDB-REDO/3d-beacons-registry
PDB-REDO/libpdb-redo
Library containing shared code for various PDB-REDO programs
PDB-REDO/pdb-redo-archive-manager
An daemon that provides access to archived PDB-REDO entries
PDB-REDO/pdb-redo-builder
Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS
PDB-REDO/pdb-redo-main
core pdb-redo script, tools and data files
PDB-REDO/pdb-redo-session-manager
A session manager for PDB-REDO
PDB-REDO/platonyzer
PDB-REDO/privateer
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
PDB-REDO/tortoize
Application to calculate ramachandran z-scores