jianshu93

jianshu93's Stars

• microsoft/mimalloc

  mimalloc is a compact general purpose allocator with excellent performance.

  Language:C10.8k157633890

• timescale/pgvectorscale

  A complement to pgvector for high performance, cost efficient vector search on large workloads.

  Language:Rust1.5k196267

• DeepGraphLearning/graphvite

  GraphVite: A General and High-performance Graph Embedding System

  Language:C++1.2k32113155

• purpleprotocol/mimalloc_rust

  A Rust wrapper over Microsoft's MiMalloc memory allocator

  Language:Rust53486845

• ingowald/cudaKDTree

  Language:C++21582120

• ParAlg/gbbs

  GBBS: Graph Based Benchmark Suite

  Language:C++202131758

• cmuparlay/ParlayANN

  A library of algorithms for approximate nearest neighbor search in high dimensions, along with a set of useful tools for designing such algorithms.

  Language:C++12761329

• TutteInstitute/evoc

  Embedding Vector Oriented Clustering

  Language:Python1175126

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust99396

• jackh726/bigtools

  A high-performance BigWig and BigBed library in Rust

  Language:Rust733317

• natir/yacrd

  Yet Another Chimeric Read Detector

  Language:Rust733488

• gtonkinhill/fastbaps

  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

  Language:R586288

• natir/fpa

  Filter of Pairwise Alignement

  Language:Rust443165

• broadinstitute/poasta

  Fast and exact gap-affine partial order alignment

  Language:Rust407202

• Lyn-liyuan/ndarray-cuda-matmul

  a high-performance computing solution designed to accelerate matrix operations using Nvidia's CUDA technology with Rust's ndarray data structure.

  Language:Rust25202

• natir/biotest

  Generate random test data for bioinformatics

  Language:Rust25221

• RagnarGrootKoerkamp/minimizers

  Reference implementations of minimizer schemes to go with the mod-minimizers paper.

  Language:Rust22415

• inbalpaz/CLANS

  CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways.

  Language:Python16132

• Daniel-Liu-c0deb0t/dlb-kmer-sampling

  Optimal distance lower bound k-mer sampling.

  Language:Rust1210

• THU-numbda/SketchNE

  Embedding billion-scale networks accurately in one hour (TKDE paper 2023)

  Language:C++10151

• bluenote-1577/sce-aligner

  A basic seed-chain-extend aligner with linear-gap cost chaining and quadratic time extension for experiments

  Language:Rust6201

• geon0325/VilLain

  Source code for WWW 2024 paper "VilLain: Self-Supervised Learning on Homogeneous Hypergraphs without Features via Virtual Label Propagation."

  Language:Python6301

• hiql/imohash

  Fast hashing for large files

  Language:Rust5111

• OrensteinLab/DecyclingSetBasedMinimizerOrder

  Code and software for minimum-decycling-set-based minimizer orders

  Language:C++4300

• Shao-Group/SubseqHash2

  Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

  Language:C++4000

• KoslickiLab/prokrustean

  Language:C++31140

• bluenote-1577/basic_seed_chainer

  Language:Rust2201

• dyxstat/ImputeCC

  ImputeCC enhances integrative Hi-C-based metagenomic binning through constrained random-walk-based imputation

  Language:Python2101

• natir/dynseq

  A dynamic representation of DNA sequence.

  Language:Rust110

• pegesund/pgvectorscale

  A complement to pgvector for high performance, cost efficient vector search on large workloads.

  Language:Rust1000