natir/yacrd

Issues

• many metagenomic samples has redundant reads but not errors

  #55 opened a month ago by jianshu93
  3

• yacrd for detecting chimeras in amplicon sequences

  #54 opened 9 months ago by Robvh-git
  3

• Detection of chimeras in nanopore reads

  #52 opened a year ago by fernanarr
  6

• Order of Chimera detection and scrubbing

  #53 opened a year ago by Rohit-Satyam
  2

• raw fastq file sequences ID did not fully appear in the *report.yacrd

  #46 opened 3 years ago by jiajia19901101
  5

• Error while running yacrd

  #51 opened 2 years ago by SFreddi
  6

• Faster yacrd

  #41 opened 2 years ago by natir
  5

• how about using -X when running minimap2?

  #47 opened 2 years ago by jflot
  1

• Why the overlap?

  #49 opened 2 years ago by emiliomastriani
  2

• Compilation error due to incompatible clap version?

  #48 opened 2 years ago by dpryan79
  3

• 1.0 progression

  #12 opened 2 years ago by natir
  0

• What pipeline should I use?

  #45 opened 3 years ago by Yutang-ETH
  7

• interpreting results

  #44 opened 3 years ago by colindaven
  5

• Mismatched types

  #42 opened 3 years ago by dpryan79
  2

• Filter from .yacrd report

  #40 opened 4 years ago by Maraikep
  8

• Multi-threading overlapping file parsing

  #14 opened 4 years ago by natir
  0

• Multi-threading post-chimeric detection operation

  #15 opened 4 years ago by natir
  0

• post-detection operation code factorization

  #19 opened 4 years ago by natir
  0

• MDA chimeric reads

  #32 opened 4 years ago by FSciammarella
  3

• Error: --input provided more than once....

  #38 opened 4 years ago by nextgenusfs
  2

• yacrd parameters optimization

  #39 opened 4 years ago by SergeiF1987
  4

• escape characters `/` and `\` in ondisk filename

  #36 opened 4 years ago by natir
  1

• thread 'main' panicked at 'slice index starts at 8092 but ends at 7507'

  #37 opened 4 years ago by dominik-handler
  12

• Reduce memory usage

  #34 opened 4 years ago by natir
  1

• Detect fasta or fastq without use extension

  #29 opened 4 years ago by natir
  1

• Better panic message

  #18 opened 4 years ago by natir
  2

• Provide clearer documentation on output file name munging (and/or a means to specify output file names)

  #25 opened 4 years ago by oneillkza
  2

• Comparisons with MiniScrub

  #31 opened 5 years ago by FSciammarella
  1

• Kernel panic at 'called `Option::unwrap()`

  #33 opened 5 years ago by FSciammarella
  2

• Can I use yacrd to remove palindromes in long reads obtained from MDA?

  #30 opened 5 years ago by ilnamkang
  7

• Please clarify whether chimeric read detection also performs scrubbing

  #26 opened 5 years ago by oneillkza
  2

• yacrd usable for Nanopore cDNA reads?

  #27 opened 5 years ago by michieitel
  2

• thread 'main' panicked at 'called `Option::unwrap()` on a `None` value'

  #28 opened 5 years ago by HaploKit
  6

• trouble for installation

  #24 opened 5 years ago by dcourtine
  1

• example for splitting command line

  #23 opened 5 years ago by rchikhi
  1

• Thread 'main' panicked at 'called `Option::unwrap() ERROR

  #22 opened 6 years ago by bbalog87
  6

• json output

  #20 opened 6 years ago by natir
  0

• post-chimeric detection operation: spliting

  #16 opened 6 years ago by natir
  2

• trouble in postdetection output generation

  #21 opened 6 years ago by natir
  1

• Compilation error: converting to 'std::priority_queue

  #9 opened 6 years ago by tseemann
  4

• post-chimeric detection operation: extract

  #17 opened 6 years ago by natir
  0

• Accept multiple file as input

  #13 opened 6 years ago by natir
  0

• read and write compressed file

  #7 opened 6 years ago by natir
  2

• Add --version switch

  #10 opened 6 years ago by tseemann
  1

• Deleted chimeric and no-coverage reads from a file in different file format

  #6 opened 6 years ago by natir
  2

• Installation error

  #5 opened 6 years ago by gwaldbieser
  4