Extracts data from Fission Yeast Lifespan Microdissector images.
Installation
fylm_critic has only been run on Ubuntu 14.04. Use other operating systems only if you really know what you're doing.
First, in a terminal, install the required system packages:
$ sudo apt-get update
$ sudo apt-get install -y git gcc gfortran build-essential python2.7 python2.7-dev python-pip python-virtualenv tk tk-dev python-tk mencoder
Then clone this repo and make a virtual environment:
$ git clone https://github.com/jimrybarski/fylm.git
$ cd fylm
$ virtualenv env
$ . env/bin/activate
Now install the Python dependencies (this could take a while):
$ pip install numpy Cython scipy
$ pip install -r requirements.txt
$ pip install -r external_requirements.txt