Pinned Repositories
autogram
Searches for autograms (sentences that give the count of each letter that they contain)
biofits
Common biochemical data fitting functions
fylm
FYLM Critic: extracts data from Fission Yeast Lifespan Microdissector images.
nd2reader
Pure Python library for reading NIS Elements ND2 images and metadata
pilercr-parser
A parser for the output of the PILER-CR CRISPR annotation tool
piwarmer
Raspberry Pi Temperature Controller
weathergov
A library to retrieve and parse weather information from US government sources
jimrybarski's Repositories
jimrybarski/nd2reader
Pure Python library for reading NIS Elements ND2 images and metadata
jimrybarski/autogram
Searches for autograms (sentences that give the count of each letter that they contain)
jimrybarski/weathergov
A library to retrieve and parse weather information from US government sources
jimrybarski/biofits
Common biochemical data fitting functions
jimrybarski/fylm
FYLM Critic: extracts data from Fission Yeast Lifespan Microdissector images.
jimrybarski/pilercr-parser
A parser for the output of the PILER-CR CRISPR annotation tool
jimrybarski/piwarmer
Raspberry Pi Temperature Controller
jimrybarski/archaic-cas-names
A database of the former names of CRISPR-associated genes
jimrybarski/consurf-pymol
Simple script to color code amino acids according to ConSurf analysis
jimrybarski/dot
jimrybarski/finkelstein-lab-palette
The lab's standard color palette
jimrybarski/finkelsteinlab.github.io
jimrybarski/fylm_critic
Analyzes microscopy data of Fission Yeast Lifespan Microdissector experiments
jimrybarski/gb-io
A Rust library for parsing, writing and manipulating Genbank sequence files
jimrybarski/gbkit
A tool for Genbank file manipulation/statistics
jimrybarski/hojidigene
Honest Jimbo's Discount Gene Editor/Viewer
jimrybarski/i3block-utils
Small programs for displaying information in my i3 bar
jimrybarski/illumina-coordinates
Parses Illumina sequence identifiers
jimrybarski/interrogate
Explain yourself! Interrogate a codebase for docstring coverage.
jimrybarski/laptop-setup
Sets up my laptop
jimrybarski/minced-parser
A Rust parser for the minCED CRISPR array annotation tool
jimrybarski/mutmut
Mutation testing system
jimrybarski/okabe-ito-inkscape-palette
Okabe-Ito and grayscale color palette for Inkscape
jimrybarski/okabe-ito-py
Okabe-Ito color palette for Python
jimrybarski/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
jimrybarski/seqtools-cli
Command line reverse complement
jimrybarski/stat_rethinking_2023
Statistical Rethinking Course for Jan-Mar 2023
jimrybarski/tools
Dotfiles, scripts, and installation scripts
jimrybarski/uncertainties
Transparent calculations with uncertainties on the quantities involved (aka "error propagation"); calculation of derivatives.
jimrybarski/Zulma
A Bulma theme for Zola