Takes the consurf.grades
file from ConSurf and colors each amino acid in the reference protein according to its degree of conservation. Darker green residues are more highly conserved. Amino acids with insufficient data are colored as if they're not conserved at all.
Put the consurf.grades
file in the same directory that you run Pymol from.
Then in the Pymol command line prompt, enter:
run consurfcolor.py