Pinned Repositories
bayesNMF
Testing bayesNMF code from the Broad
BCL2_analysis
Quantitative BCL2 analysis on DLBCL
BCL2_Family_Expression_Subgroup
CytoTree
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
ecotyper
gcp-for-bioinformatics
GCP Essentials for Bioinformatics Researchers
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
jinn0208's Repositories
jinn0208/bayesNMF
Testing bayesNMF code from the Broad
jinn0208/BCL2_analysis
Quantitative BCL2 analysis on DLBCL
jinn0208/BCL2_Family_Expression_Subgroup
jinn0208/CytoTree
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
jinn0208/ecotyper
jinn0208/gcp-for-bioinformatics
GCP Essentials for Bioinformatics Researchers
jinn0208/immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)
jinn0208/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
jinn0208/ngs-filters
Filters for false-positive mutation calls in NGS
jinn0208/parallel-elastic-alignment
A script collection and workflow description to parallelize elastic alignment with TrakEM2 on a cluster
jinn0208/PyVCF
A Variant Call Format reader for Python.
jinn0208/qupath
QuPath - Bioimage analysis & digital pathology
jinn0208/SEQprocess
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
jinn0208/SPIAT
Spatial Image Analysis of Tissues
jinn0208/survClust
An outcome weighted supervised clustering algorithm, designed to classify patients according to their molecular as well as time-event or end point of interest data.
jinn0208/Topological-tumour-graphs