jinyan9293's Stars
jingraham/neurips19-graph-protein-design
Generative Models for Graph-Based Protein Design
dauparas/ProteinMPNN
Code for the ProteinMPNN paper
cran/rrBLUP
:exclamation: This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepage: <https://potatobreeding.cals.wisc.edu/software/>
zhejiangzhuque/rrBLUP
R Package rrBLUP in Python
kyegomez/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
kateyliu/DL_gwas
cma2015/DeepGS
DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.
YuetongXU/CropGBM
AIBreeding/DNNGP
DNNGP: Deep neural network for genomic prediction
google-deepmind/alphafold
Open source code for AlphaFold.
RosettaCommons/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
alexdobin/STAR
RNA-seq aligner
DaehwanKimLab/hisat2
Graph-based alignment (Hierarchical Graph FM index)
torognes/vsearch
Versatile open-source tool for microbiome analysis
BioinfoUNIBA/QEdit
RNA editing quantification in deep transcriptome data
a2iEditing/RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
StanfordBioinformatics/SJM
Simple Job Manager
FlyPythons/DAGflow
Module to create DAG Task and Manage Task on SGE
macarthur-lab/gene_lists
List of gene lists for genomic analyses.
MRCIEU/mendelvar_standalone
Standalone version of the MendelVar pipeline
WGLab/doc-ANNOVAR
Documentation for the ANNOVAR software
samtools/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
OSU-SRLab/MANTIS
Microsatellite Analysis for Normal-Tumor InStability
OpenGene/VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data
FoundationMedicineInc/SGZ
ding-lab/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
jinyan9293/bMSISEA
Detection of micro-satellite instability from circulating tumor DNA by targeted deep sequencing
xjtu-omics/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
yodeng/runjob
runjob is a program for managing a group of related jobs running on a compute cluster
vsbuffalo/devnotes
Vince Buffalo's devnotes — ½ TIL, ½ notebook