Pinned Repositories
ab_rmsd
Calculate the RMSD between two antibody structure (including nanobody and antibody).
ABGNN
PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
adapters
A Unified Library for Parameter-Efficient and Modular Transfer Learning
Awesome_Mamba
Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复
EGNO
HypertranSynergy
MolHGCN
A Hypergraph Convolutional Neural Network for Molecular Properties Prediction using Functional Group
protein-sequence-diffusion-model
diffusion model for protein sequence generation
se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation arxiv.org/abs/2302.02277
jinzhuwei's Repositories
jinzhuwei/Machine_learning_drug_discovery
jinzhuwei/AIRS
Artificial Intelligence for Science (AIRS)
jinzhuwei/dyMEAN
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
jinzhuwei/bio-diffusion
A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data
jinzhuwei/LLM4Mol
A comprehensive repository dedicated to the collection and exploration of studies utilizing Large Language Models for molecular design, protein research, and material science.
jinzhuwei/graphchem
Graph-based machine learning for chemical property prediction
jinzhuwei/equiformer_v2
[arXiv'23] EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations
jinzhuwei/AllSet
This is the GitHub repository for our ICLR22 paper: "You are AllSet: A Multiset Function Framework for Hypergraph Neural Networks"
jinzhuwei/se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation arxiv.org/abs/2302.02277
jinzhuwei/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
jinzhuwei/Hands-On-Graph-Neural-Networks-Using-Python
Hands-On Graph Neural Networks Using Python, published by Packt
jinzhuwei/DIFFormer
The official implementation for ICLR23 spotlight paper "DIFFormer: Scalable (Graph) Transformers Induced by Energy Constrained Diffusion"
jinzhuwei/equiformer
[ICLR'23 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
jinzhuwei/CAFA5
jinzhuwei/jinzhuwei
jinzhuwei/awesome-pretrain-on-molecules
[IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models
jinzhuwei/CAFA-5-Protein-Function-Prediction
Protein Function Prediction competition on Kaggle
jinzhuwei/Graphormer
Graphormer is a general-purpose deep learning backbone for molecular modeling.
jinzhuwei/ABGNN
PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
jinzhuwei/Awesome-Diffusion-Models-for-Science
jinzhuwei/ab_rmsd
Calculate the RMSD between two antibody structure (including nanobody and antibody).
jinzhuwei/Diffusion-GAN
Official PyTorch implementation for paper: Diffusion-GAN: Training GANs with Diffusion
jinzhuwei/RDE-PPI
:mountain: Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
jinzhuwei/protein-sequence-diffusion-model
diffusion model for protein sequence generation
jinzhuwei/ImageMol
ImageMol is a molecular image-based pre-training deep learning framework for computational drug discovery.
jinzhuwei/GNNPapers
Must-read papers on graph neural networks (GNN)
jinzhuwei/ProtMD
jinzhuwei/echognn
Graph Neural Networks for Explainable Ejection Fraction Estimation
jinzhuwei/HowToCook
程序员在家做饭方法指南。Programmer's guide about how to cook at home (Chinese only).
jinzhuwei/drugVQA
Predicting Drug Protein Interaction using Quasi-Visual Question Answering System