Pinned Repositories
ab_rmsd
Calculate the RMSD between two antibody structure (including nanobody and antibody).
ABGNN
PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
adapters
A Unified Library for Parameter-Efficient and Modular Transfer Learning
Awesome_Mamba
Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复
EGNO
HypertranSynergy
MolHGCN
A Hypergraph Convolutional Neural Network for Molecular Properties Prediction using Functional Group
protein-sequence-diffusion-model
diffusion model for protein sequence generation
se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation arxiv.org/abs/2302.02277
jinzhuwei's Repositories
jinzhuwei/Awesome_Mamba
Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
jinzhuwei/ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复
jinzhuwei/EGNO
jinzhuwei/adapters
A Unified Library for Parameter-Efficient and Modular Transfer Learning
jinzhuwei/AI2BMD
AI-powered ab initio biomolecular dynamics simulation
jinzhuwei/Awesome-Hypergraph-Network
A curated list of Hypergraph Learning, Hypergraph Theory, Hypergraph Dataset and Hypergraph Tool.
jinzhuwei/HypertranSynergy
jinzhuwei/awesome-AI4ProteinConformation-MD
List of protein (enzymes and PPIs) conformations and molecular dynamics using generative artificial intelligence and deep learning
jinzhuwei/awesome-self-supervised-gnn
Papers about pretraining and self-supervised learning on Graph Neural Networks (GNN).
jinzhuwei/caduceus
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
jinzhuwei/chemprop
Message Passing Neural Networks for Molecule Property Prediction
jinzhuwei/chroma
A generative model for programmable protein design
jinzhuwei/DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
jinzhuwei/DIG
A library for graph deep learning research
jinzhuwei/DiM
Diffusion Image Mamba
jinzhuwei/equiformer-pytorch
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
jinzhuwei/esm
jinzhuwei/FABind
FABind: Fast and Accurate Protein-Ligand Binding (NIPS 2023)
jinzhuwei/LDM-3DG
[ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen
jinzhuwei/machine-learning-resource
jinzhuwei/Machine_learning_drug_discovery
jinzhuwei/MFFMT
jinzhuwei/MolCA
Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".
jinzhuwei/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities.
jinzhuwei/pytorch_geometric
Graph Neural Network Library for PyTorch
jinzhuwei/SGGRL
The implementation of the paper "Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry".
jinzhuwei/Str2Str
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
jinzhuwei/torchmd
End-To-End Molecular Dynamics (MD) Engine using PyTorch
jinzhuwei/TransAntivirus
Transformer-based molecular generative model for antiviral drug design
jinzhuwei/x-transformers
A simple but complete full-attention transformer with a set of promising experimental features from various papers