jinzhuwei

jinzhuwei's Stars

• zjunlp/Mol-Instructions

  [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

  Language:Python25716

• YangLing0818/BindDM

  [AAAI 2024] Binding-Adaptive Diffusion Models for Structure-Based Drug Design

  Language:Python13

• YangLing0818/IPDiff

  [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models

  Language:Python312

• jinzhuwei/Awesome_Mamba

  Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.

  151

• jinzhuwei/EGNO

  1

• LirongWu/MAPE-PPI

  Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

  Language:Python26247

• TianyuFan0504/WAS

  Code for ICLR'24 Paper "Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks"

  Language:Python9

• dvlab-research/LongLoRA

  Code and documents of LongLoRA and LongAlpaca (ICLR 2024 Oral)

  Language:Python2.7k277

• Graylab/GeoDock

  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

  Language:Python8615

• getcontacts/getcontacts

  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

  Language:Python10241

• jaredsampson/ABangle

  A tool for calculating and analysing the VH-VL orientation in antibodies.

  Language:Python22

• DeepGraphLearning/DiffPack

  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

  Language:Python807

• y1zhou/torchmd

  End-To-End Molecular Dynamics (MD) Engine using PyTorch

  Language:Python1

• y1zhou/pdbtbx

  A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

  Language:Rust1

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.3k659

• ehoogeboom/e3_diffusion_for_molecules

  Language:Python457111

• deepmodeling/Uni-Mol

  Official Repository for the Uni-Mol Series Methods

  Language:Python748132

• joonspk-research/generative_agents

  Generative Agents: Interactive Simulacra of Human Behavior

  18k2.3k

• Shen-Lab/LDM-3DG

  [ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen

  Language:Python427

• bowen-gao/ProFSA

  [ICLR 2024] ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment

  Language:Python12

• yuzhimanhua/Awesome-Scientific-Language-Models

  A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery (EMNLP'24)

  51128

• BGI-SynBio/PyMOL-PUB

  Rapid generation of high-quality structure figures for publication with PyMOL-PUB

  Language:Python673

• BioinfoMachineLearning/GCPNet

  A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)

  Language:Python404

• microsoft/protein-frame-flow

  Fast protein backbone generation with SE(3) flow matching.

  Language:Python23622

• analysis-tools-dev/dynamic-analysis

  ⚙️ A curated list of dynamic analysis tools and linters for all programming languages, binaries, and more.

  Language:Markdown958106

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python666118

• baker-laboratory/rf_diffusion_all_atom

  Public RFDiffusionAA repo

  Language:Python33456

• MattMcPartlon/AttnPacker

  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

  Language:Python7912

• OATML-Markslab/ProteinNPT

  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"

  Language:Python919

• intitni/CopilotForXcode

  The first GitHub Copilot, Codeium and ChatGPT Xcode Source Editor Extension

  Language:Swift7.9k393