jkalleberg

Ph.D. | Post-doctoral Researcher, Bioinformatics | MU Animal Genomics Group

University of MissouriColumbia, MO

Pinned Repositories

deeppolisher
Transformer-based sequence correction method for genome assembly polishing
Language:Jupyter Notebook22 4 32
cue
Deep learning framework for SV calling and genotyping
Language:Jupyter Notebook00
DV-TrioTrain
TrioTrain is an automated pipeline for retraining the DeepVariant Model
Language:Python10
NEAT
Language:Python00
templates
A repository with my "moving in" scripts for HPC
Language:Shell10
using_DeepVariant
An introductory project to familiarize undergrad students with Variant Calling
Language:Shell00
cue
Deep learning framework for SV calling and genotyping
Language:Jupyter Notebook97 6 2319

jkalleberg's Repositories

jkalleberg/DV-TrioTrain
TrioTrain is an automated pipeline for retraining the DeepVariant Model
Language:Python10
jkalleberg/templates
A repository with my "moving in" scripts for HPC
Language:Shell10
jkalleberg/cue
Deep learning framework for SV calling and genotyping
Language:Jupyter Notebook00
jkalleberg/NEAT
Language:Python00
jkalleberg/using_DeepVariant
An introductory project to familiarize undergrad students with Variant Calling
Language:Shell00