Pinned Repositories
AltHapAlignR
ATACseq_pipeline
eqtl-intro
An introductory course to eQTL analysis.
impute-tools
Scripts to facilitate imputation of genotypes and subsequent QC.
latex-thesis
mePipe
Functions to support running of Matrix-eQTL analysis pipeline. This includes support for adding principle components as covariates and determining the optimal number of principal components to include.
mirna_pipeline
bioinformatics pipeline to analyze micro RNA sequencing data
RNA-Seq_course
SepstratifieR
Stratification of infectious disease patients by gene expression profile
TAPS-pipeline
Codes for processing of methylation data generated using the TAPS method
jknightlab's Repositories
jknightlab/eqtl-intro
An introductory course to eQTL analysis.
jknightlab/AltHapAlignR
jknightlab/ATACseq_pipeline
jknightlab/impute-tools
Scripts to facilitate imputation of genotypes and subsequent QC.
jknightlab/mirna_pipeline
bioinformatics pipeline to analyze micro RNA sequencing data
jknightlab/SepstratifieR
Stratification of infectious disease patients by gene expression profile
jknightlab/latex-thesis
jknightlab/mePipe
Functions to support running of Matrix-eQTL analysis pipeline. This includes support for adding principle components as covariates and determining the optimal number of principal components to include.
jknightlab/RNA-Seq_course
jknightlab/TAPS-pipeline
Codes for processing of methylation data generated using the TAPS method
jknightlab/Abu-Dhabi
Abu Dhabi population genetics and T2D/metformin RNAseq
jknightlab/genotype-tools
Scripts to facilitate processing of genotyping data.
jknightlab/GitHub_and_Rmd_Introduction
An introduction to using git and R markdown to document projects
jknightlab/heatshock
Analysis of the transcriptional response to heat shock in LCLs
jknightlab/hussein_rnaseq
jknightlab/SepstratifieR-paper_Sci-Trans-Med_2022
This repository contains all the codes associated with the paper "An immune dysfunction score for stratification of patients with acute infection based on whole blood gene expression" by Cano-Gamez et al.
jknightlab/AD_git
upload AD docs
jknightlab/analysis-with-docker
Slides discussing how to use Docker for data analyses.
jknightlab/Enhancer-RNA
jknightlab/eQTL-plots
jknightlab/git-intro
A brief introduction to git and GitHub.
jknightlab/HTSeq
High throughput / next generation sequencing pipeline
jknightlab/ICeCAP
Fork of Gabriele's ICeCAP pipeline for reference in the jknightlab GitHub
jknightlab/influenza
jknightlab/neut-blueprint
Blueprint analysis of Neutrophil eQTL data
jknightlab/ONT-methylation-pipeline
Codes used for analysing sequencing data and modified base information derived using ONT
jknightlab/Sample-identity-CHECK