Pinned Repositories
proActiv
Estimation of Promoter Activity from RNA-Seq data
awesome_spatial_omics
tools and notes for spatial omics
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
banksy-zenodo
Scripts to reproduce BANKSY analyses.
BayesSpace
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
daiso
Degradation-aware isoform quantification
neural-processes
PyTorch implementation of latent neural processes.
seurat-wrappers
Community-provided extensions to Seurat
ZB4171-project
Banksy
BANKSY: spatial clustering
jleechung's Repositories
jleechung/banksy-zenodo
Scripts to reproduce BANKSY analyses.
jleechung/seurat-wrappers
Community-provided extensions to Seurat
jleechung/ZB4171-project
jleechung/awesome_spatial_omics
tools and notes for spatial omics
jleechung/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
jleechung/BayesSpace
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
jleechung/daiso
Degradation-aware isoform quantification
jleechung/escnn
Equivariant Steerable CNNs Library for Pytorch
jleechung/FICT-SAMPLE
Depository for the sample code using FICT
jleechung/hello-world
jleechung/icp
A Python implementation of the Iterative Closest Point algorithm
jleechung/neural-processes
PyTorch implementation of latent neural processes.
jleechung/LaTeX-Templates
Commented templates for CVs, homework, lecture notes, presentations, research papers, and essays, with commands for math/statistics symbols
jleechung/mahotas
Computer Vision in Python
jleechung/MUSE
MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.
jleechung/pcurvepy
Principal curves implementation (Hastie '89) in Python
jleechung/proActiv
Estimation of Promoter Activity from RNA-Seq data
jleechung/qeval
jleechung/RCAv2
R package for robust clustering of single cell RNA sequencing data
jleechung/rigraph
igraph R package
jleechung/schelpers
Helper functions for single cell analyses
jleechung/stellargraph
StellarGraph - Machine Learning on Graphs
jleechung/trackViewer
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
jleechung/ZB4199-Thesis