Pinned Repositories
statdepth
Implementation of depth calculation methods for genomics data
1d-constrastive-autoencoder
1d autoencoder that trains a contrastive loss in the latent and reconstruction loss on the output
big-csv
A Python script to manipulate large csv/tsv files that can't fit in memory
ConvNeXt-lightning
An implementation of the ConvNeXt architecture built on the PyTorch-Lightning API
Cruzhacks
The Transparency Project, a CruzHacks 2020 1st place project. Our goal? To bring clarity to the American political process through interactive data visualization.
organoid-classification
Projects
The master list of all my projects
SIMS
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
torchcsv
An Pytorch Dataset and Dataloader library for handling numerical data too large to fit in local memory
touchid-for-sudo
A script to safely enable using the Macbook's Touch ID for sudo running commands
jlehrer1's Repositories
jlehrer1/big-csv
A Python script to manipulate large csv/tsv files that can't fit in memory
jlehrer1/SIMS
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data
jlehrer1/torchcsv
An Pytorch Dataset and Dataloader library for handling numerical data too large to fit in local memory
jlehrer1/1d-constrastive-autoencoder
1d autoencoder that trains a contrastive loss in the latent and reconstruction loss on the output
jlehrer1/ConvNeXt-lightning
An implementation of the ConvNeXt architecture built on the PyTorch-Lightning API
jlehrer1/InstantEDA
Instantly generate common exploratory data plots without worrying about cleaning your DataFrame.
jlehrer1/dotfiles
Files for my system. Includes things like aliases, custom commands, scripts, etc.
jlehrer1/Projects
The master list of all my projects
jlehrer1/pykallisto
A Python library for RNA-seq alignment and normalization via Kallisto
jlehrer1/Cruzhacks
The Transparency Project, a CruzHacks 2020 1st place project. Our goal? To bring clarity to the American political process through interactive data visualization.
jlehrer1/organoid-classification
jlehrer1/am213a
Work from AM213A, Numerical Linear Algebra
jlehrer1/CLIP-trainer
A straightforward implementation of the CLIP model with detailed comments, for educational purposes :-)
jlehrer1/DeepTCR
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
jlehrer1/DengAI
My explorations, visualizations, and models from the DrivenData.co DengAI competition
jlehrer1/detector
jlehrer1/gitignore
A collection of useful .gitignore templates
jlehrer1/gpt-ddp
A library for training transformer models with distributed data parallelism with torchrun
jlehrer1/jlehrer1
My profile README
jlehrer1/jlehrer1.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
jlehrer1/LiveCELL-line-classifier
A CNN for classifying cell line images into cell type, based on the LIVECell dataset
jlehrer1/pretrainer
An easy-to-use library for vision model pretraining using self-supervised learning
jlehrer1/scGPT-scalable
Docker + kube and script
jlehrer1/scnym-modern
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
jlehrer1/SIMS-benchmark
The model zoo and benchmarking for the SIMS method
jlehrer1/tabnet-lightning
A high-level API extension of TabNet for training with PyTorch Dataloaders directly
jlehrer1/tinycomp
A Python library for doing computations on small subsets of a DataFrame too large to fit in memory.
jlehrer1/torchboost
A PyTorch API for iteratively training gradient boosted trees on data too large to fit in local memory.
jlehrer1/VisualizeGPT
Generate data visualizations with natural language using LLMs
jlehrer1/ViT-Lightning
A PyTorch-Lightning wrapper for vision transformer models.