jlotthammer
Computational Systems Biology Ph.D Student at Washington University in St. Louis in the @holehouse-lab
St. Louis, Missouri
Pinned Repositories
pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
chroma
A generative model for programmable protein design
dirichlet-flow-matching
chroma
A generative model for programmable protein design
getSequence
A tool to get a uniprot sequence returned to terminal or from within Python.
Liger-Kernel
Efficient Triton Kernels for LLM Training
pyrelational
pyrelational is a python active learning library for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.
rfasta
rfasta is a port of protfasta to rust with python bindings
rust_random_walk
3D brownian particle random walk - single and multiprocess implementations in both python and rust [and cython bindings].
pyrelational
pyrelational is a python active learning library for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.
jlotthammer's Repositories
jlotthammer/rfasta
rfasta is a port of protfasta to rust with python bindings
jlotthammer/chroma
A generative model for programmable protein design
jlotthammer/getSequence
A tool to get a uniprot sequence returned to terminal or from within Python.
jlotthammer/Liger-Kernel
Efficient Triton Kernels for LLM Training
jlotthammer/pyrelational
pyrelational is a python active learning library for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.
jlotthammer/rust_random_walk
3D brownian particle random walk - single and multiprocess implementations in both python and rust [and cython bindings].