generatebio/chroma

Issues

• Import issues with Chroma

  #58 opened 3 months ago by venzera
  1

• Conditioning on protein of different length than protein to be designed

  #54 opened 6 months ago by sweatyaiguy
  1

• Example of script for binder design

  #57 opened 4 months ago by ahof1704
  0

• Problem in installation

  #56 opened 4 months ago by calimbrasti94
  0

• De-novo binder generation with a hotspot

  #43 opened a year ago by kushnarang
  1

• linking downloaded weight for offline chroma usage

  #52 opened 7 months ago by peptidelinks
  10

• Refinement of structure?

  #55 opened 6 months ago by gezmi
  0

• Is the training code available?

  #53 opened 7 months ago by LtECoD
  0

• Example of training a classifier based on graphclassifier

  #51 opened 7 months ago by Zebreu
  0

• Create functional proteins from a given protein Template/Profile?

  #50 opened 8 months ago by Travis13197
  1

• Batched conditional generation

  #25 opened a year ago by wujiewang
  0

• Design multiple sequences for the same input structure

  #48 opened 9 months ago by prateekbansal97
  4

• RuntimeError: Expected all tensors to be on the same device, but found at least two devices, cuda:0 and cpu!

  #46 opened 10 months ago by ppxwwtaking
  4

• Made a few adjustments, please check out. 'samples' issue and batch splitting.

  #47 opened 10 months ago by sona9soba
  0

• How to design the interface residues within complex.

  #45 opened a year ago by ning-2022
  0

• HTTPError: 500 Server Error: Internal Server Error for url: https://chroma-weights.generatebiomedicines.com/downloads?token=%5B<api-key>%5D&weights=chroma_backbone_v1.0.pt

  #44 opened a year ago by Hanoriega
  5

• Substructure Conditioner - Supplementary Appendix O

  #39 opened a year ago by jlotthammer
  4

• Tensors not on the same device

  #40 opened a year ago by Bloeci
  2

• How to do deterministic sampling?

  #42 opened a year ago by Lifedecoder
  4

• Binder design notebook with specified hotspot

  #27 opened a year ago by Samuel-gwb
  3

• Computing the TM score against the PDB dataset

  #41 opened a year ago by ahof1704
  0

• Constrained diffusion on one chain in a protein complex

  #36 opened a year ago by caseysm
  3

• Prediction of secondary structure

  #38 opened a year ago by ahof1704
  2

• Example on how to condition on Sequence (and Structure)

  #37 opened a year ago by fabiotrovato
  11

• the structure of sequences generated by chroma.design()

  #32 opened a year ago by Lyn-666
  5

• Progress Bars during Sampling

  #35 opened a year ago by LaurinLang
  1

• Great work! Question re. weight format/transformers 4.35.2

  #23 opened a year ago by lamm-mit
  2

• Question for CDRs Method

  #33 opened a year ago by Charlesjc-lab
  3

• problem about "protein = chroma.design(protein)"

  #34 opened a year ago by ning-2022
  3

• Where could I find the code to generate the results in paper fig3 b?

  #31 opened a year ago by songhe2009
  0

• Length-variable design with substructure conditioner

  #30 opened a year ago by Immortals-33
  4

• Strange output from inpainting

  #24 opened a year ago by hnisonoff
  6

• 'display' issue

  #29 opened a year ago by venuv
  2

• Conditioning on AA composition

  #20 opened a year ago by AlexWindels
  2

• ProClass Conditioner List of Values

  #28 opened a year ago by dannyoo
  1

• Chroma use on read-only file systems

  #8 opened a year ago by jasonkey
  8

• seeking advices for conditional binder design

  #9 opened a year ago by vuhongai
  3

• De-novo binder generation

  #14 opened a year ago by kushnarang
  7

• Selection syntax

  #22 opened a year ago by bobbyhollingsworthiv
  2

• Simple example fails on windows 11 on jupyter lab

  #19 opened a year ago by eugenio
  5

• fileNotFound error

  #13 opened a year ago by ecass777
  6

• Is it possible to save the potts params used for sequence sampling?

  #21 opened a year ago by sokrypton
  1

• Installation fails on windows 11 and wsl2 with python >= 3.11

  #17 opened a year ago by eugenio
  3

• long time persist model parameters

  #15 opened a year ago by cyrushu
  0

• Protein folding

  #12 opened a year ago by kushnarang
  1

• Running chroma from docker

  #11 opened a year ago by e-osipov
  3

• Expected all tensors to be on the same device

  #10 opened a year ago by QUEST2179
  1

• Cannot select multiple index ranges of protein for SubstructureConditioner

  #7 opened a year ago by SIAndersson
  4

• ImportError: cannot import name 'api' from 'chroma'

  #6 opened a year ago by nickyoungforu
  2

• Doc on design_selection in chroma.design

  #5 opened a year ago by v-shaoningli
  3