Pinned Repositories
af2bind
af_backprop
ColabBio
random colab notebooks for biology
ColabDesign
Making Protein Design accessible to all via Google Colab!
ColabFold
Making Protein folding accessible to all!
GREMLIN
GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.
GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
map_align
Contact map alignment
seqmodels
SMURF
sokrypton's Repositories
sokrypton/ColabFold
Making Protein folding accessible to all!
sokrypton/ColabDesign
Making Protein Design accessible to all via Google Colab!
sokrypton/GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
sokrypton/af2bind
sokrypton/af_backprop
sokrypton/ColabBio
random colab notebooks for biology
sokrypton/RFdiffusion
Code for running RFdiffusion
sokrypton/roscon2024
Tutorial files
sokrypton/algosb_2021
for algosb workshop
sokrypton/HelixFold
sokrypton/OmegaFold
OmegaFold Release Code
sokrypton/GREMLIN_LH
sokrypton/RoseTTAFold2
sokrypton/seqsal_v2
sokrypton/alphafold
Open source code for AlphaFold.
sokrypton/DeepLearningExamples
State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.
sokrypton/EMBOIntegModelling23
sokrypton/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
sokrypton/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
sokrypton/ws2023
sokrypton/AM216
Material for lecture
sokrypton/casp15_analysis
sokrypton/dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
sokrypton/esm3
sokrypton/alphafold3
AlphaFold 3 inference pipeline.
sokrypton/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
sokrypton/ColabDesign_params
params moved to seperate repo
sokrypton/interactive-gremlin
sokrypton/plot_pseudo_3D
sokrypton/responsiblereview