sokrypton

Pinned Repositories

af2bind
Language:Jupyter Notebook41 4 35
af_backprop
Language:Python35 5 017
ColabBio
random colab notebooks for biology
Language:Jupyter Notebook17 2 02
ColabDesign
Making Protein Design accessible to all via Google Colab!
Language:Python557 27 67129
ColabFold
Making Protein folding accessible to all!
Language:Jupyter Notebook1.9k 46 547479
GREMLIN
GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.
Language:MATLAB14 7 16
GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
Language:Jupyter Notebook53 8 026
map_align
Contact map alignment
Language:C++38 7 015
seqmodels
Language:Jupyter Notebook30 4 04
SMURF
Language:Python128 9 413

sokrypton's Repositories

sokrypton/ColabFold
Making Protein folding accessible to all!
Language:Jupyter Notebook1.9k 46 547479
sokrypton/ColabDesign
Making Protein Design accessible to all via Google Colab!
Language:Python557 27 67129
sokrypton/GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
Language:Jupyter Notebook53 8 026
sokrypton/af2bind
Language:Jupyter Notebook41 4 35
sokrypton/af_backprop
Language:Python35 5 017
sokrypton/ColabBio
random colab notebooks for biology
Language:Jupyter Notebook17 2 02
sokrypton/RFdiffusion
Code for running RFdiffusion
Language:Python10 2 07
sokrypton/algosb_2021
for algosb workshop
Language:Jupyter Notebook9 3 0
sokrypton/TrDesign_partialhall
TrDesign w/ Partial Hallucination support
Language:Python9 4 01
sokrypton/HelixFold
Language:Python8 3 23
sokrypton/roscon2024
Tutorial files
Language:Jupyter Notebook81
sokrypton/OmegaFold
OmegaFold Release Code
Language:Python7 3 04
sokrypton/GREMLIN_LH
Language:Jupyter Notebook4 4 13
sokrypton/RoseTTAFold2
Language:Python3 1 02
sokrypton/seqsal_v2
3 5 10
sokrypton/AfDesign_partial
WIP
Language:Jupyter Notebook2 2 0
sokrypton/DeepLearningExamples
State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.
Language:Jupyter Notebook2 1 0
sokrypton/EMBOIntegModelling23
Language:Jupyter Notebook2 2 0
sokrypton/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Language:Python2 1 02
sokrypton/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python2 1 01
sokrypton/ws2023
Language:Jupyter Notebook2 3 01
sokrypton/alphafold
Open source code for AlphaFold.
Language:Python1 1 05
sokrypton/AM216
Material for lecture
Language:Jupyter Notebook1 3 0
sokrypton/casp15_analysis
Language:Jupyter Notebook1 2 0
sokrypton/dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
Language:Python1 1 0
sokrypton/esm3
Language:Python1
sokrypton/chai-lab
Chai-1, SOTA model for biomolecular structure prediction
Language:Python
sokrypton/ColabDesign_params
params moved to seperate repo
Language:Jupyter Notebook
sokrypton/plot_pseudo_3D
Language:Python
sokrypton/responsiblereview