sokrypton/algosb_2021

for algosb workshop

algosb_2021

for algosb workshop

Intro Notebook comparing PSSM to MRF

• Intro_to_MRFs_jax

Intro Notebook comparing AEs to INV_COV, PCA and KMEANS

• Intro_to_AEs

Notebooks for categorical jacobian extraction

• BERT-ESM1b
• MSA_transformer
• AlphaFold

Bonus

• MSA_transformer = power iteration hypothesis
• AlphaFold for Design
• GREMLIN in JAX
• GREMLIN in Keras