Pinned Repositories
gambit
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
gambit-publication
Snakemake workflow to generate figures and results from GAMBIT paper
geodesiclm
Geodesic Levenberg-Marquardt
nbcat
View contents of Jupyter notebooks in the terminal with syntax highlighting.
org-json
Export org mode files/elements to JSON.
ox-json
JSON export back end for Emacs Org mode
pyorg
Python library for working with Emacs org mode.
pyorg-flask
Flask app for pyorg package
python-emacs
Python interface to GNU Emacs.
triarray
Python package for working with pairwise distance/similarity matrices in non-redundant format.
jlumpe's Repositories
jlumpe/geodesiclm
Geodesic Levenberg-Marquardt
jlumpe/nbcat
View contents of Jupyter notebooks in the terminal with syntax highlighting.
jlumpe/babou
Implementation of the surreal numbers in Python.
jlumpe/deepdream
jlumpe/statsnerds-pubs-2017
Stats nerds supergroup in PUBS 2017.
jlumpe/analysis-project
Python package for managing scripts and data for a scientific data analysis or data science project.
jlumpe/bravado-core
jlumpe/documenter2docset
Utility to convert Julia package documentation generated by Documenter.jl to Dash-compatible docsets.
jlumpe/ipqb-ramachandran
iPQB summer project
jlumpe/lyve-SET
LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
jlumpe/lyve-set-conda
Conda recipe for the lyve-SET tool
jlumpe/pycyt-old
Python API for the analysis of high-throughput flow cytometry data
jlumpe/pygraphviz
Python interface to Graphviz graph drawing package
jlumpe/snakefile-tmbundle
TextMate bundle with grammar for SnakeMake Snakefiles.
jlumpe/sympy
A computer algebra system written in pure Python
jlumpe/tomdeman-genomics_workflow
Bacterial assembly and annotation pipeline