jluquette

Pinned Repositories

WiggleTools
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
Language:C144 18 6925
msi
MSI detection
Language:C01
msi2
Newer version of the msi repo
Language:Python00
scan2
SCAN2 is a somatic SNV and indel genotyper intended for analysis of single cells amplified by Primary Template-directed Amplification (PTA)
Language:Python00
SCAN2_PTA_paper_2022
Scripts supporting the analysis performed in Luquette et al. 2022
Language:R00
luquette-glia-analysis
Scripts for the glia project
Language:R0 3 10
r-scan2
R package supporting the SCAN2 pipeline
Language:R0 5 13
scan-snv
Single cell somatic genotyper
Language:Python9 4 75
SCAN2
SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
Language:Python11 6 135

jluquette's Repositories

jluquette/msi
MSI detection
Language:C01
jluquette/msi2
Newer version of the msi repo
Language:Python00
jluquette/scan2
SCAN2 is a somatic SNV and indel genotyper intended for analysis of single cells amplified by Primary Template-directed Amplification (PTA)
Language:Python00
jluquette/SCAN2_PTA_paper_2022
Scripts supporting the analysis performed in Luquette et al. 2022
Language:R00