Pinned Repositories
ansible-module-infoblox
Awesome infobox module for ansible
bcviz
JavaScript visualisation for bamcheck file format
npg_conda
NPG Conda recipes and tools
npg_qc
QC checks and metrics for Illumina NGS data
npg_ranger
Fork from wtsi-npg
npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
npg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
jmtcsngr's Repositories
jmtcsngr/bcviz
JavaScript visualisation for bamcheck file format
jmtcsngr/npg_conda
NPG Conda recipes and tools
jmtcsngr/npg_qc
QC checks and metrics for Illumina NGS data
jmtcsngr/npg_ranger
Fork from wtsi-npg
jmtcsngr/npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
jmtcsngr/npg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
jmtcsngr/auth
jmtcsngr/bambi
A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB
jmtcsngr/containers
Singularity and Docker material
jmtcsngr/diskfree_record
Records requested df results in an sqlite database, and displays it in a time range using an ascii chart
jmtcsngr/genotyping
Components of the WTSI genotype analysis pipeline.
jmtcsngr/htsget-compliance
Compliance testing for htsget deployments
jmtcsngr/longue_vue
A QC user interface for long-read QC
jmtcsngr/miqScoreShotgunPublic
Repo for public-facing shotgun MIQ score
jmtcsngr/ml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systems
jmtcsngr/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 - adapted to run at the Wellcome Sanger Institute
jmtcsngr/npg-irods-python
Applications for the management of data and metadata in iRODS
jmtcsngr/npg_irods
Tools for managing HTS (BAM and CRAM) format files in iRODS.
jmtcsngr/npg_langqc
jmtcsngr/npg_ml_warehouse
Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
jmtcsngr/npg_seq_common
Utilities for handling NGS data
jmtcsngr/npg_seq_melt
Operations on processed sequencing data (merges, metadata updates for the archive, etc.)
jmtcsngr/npg_sequencescape_warehouse
Old sequencescape warehouse: DBIx binding, loader, LIMs driver for st::api::lims
jmtcsngr/p4
Process and Pipe Pipeline Panacea
jmtcsngr/partisan
A Python client API for iRODS
jmtcsngr/perl-dnap-utilities
WTSI DNA Pipelines Perl Utility Library
jmtcsngr/perl-irods-wrap
Perl iRODS Client Wrapper Library
jmtcsngr/pipeline_orchestration
jmtcsngr/samtools_container
Scripts to create a docker container for samtools
jmtcsngr/sqyrrl
Sqyrrl - an HTTP server for files hosted in iRODS