Pinned Repositories
bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
baton
iRODS client programs and API
genotyping
Components of the WTSI genotype analysis pipeline.
illumina2bam
Generate and process BAM files from Illumina sequencing instrument files
npg_qc
QC checks and metrics for Illumina NGS data
npg_ranger
NGS data streaming (sam, bam, cram, vcf) - pre-production
npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
Percolate
A parallel workflow management application.
perl-irods-wrap
Perl iRODS Client Wrapper Library
samtools
Wellcome Sanger Institute - NPG's Repositories
wtsi-npg/baton
iRODS client programs and API
wtsi-npg/bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
wtsi-npg/npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
wtsi-npg/genotyping
Components of the WTSI genotype analysis pipeline.
wtsi-npg/npg_qc
QC checks and metrics for Illumina NGS data
wtsi-npg/perl-irods-wrap
Perl iRODS Client Wrapper Library
wtsi-npg/bcviz
JavaScript visualisation for bamcheck file format
wtsi-npg/ml_warehouse
Perl DBIx binding to a warehouse housing data from multiple LIM systems
wtsi-npg/npg_tracking
WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking
wtsi-npg/p4
Process and Pipe Pipeline Panacea
wtsi-npg/irods-metadata
Description of a subset of metadata used in WTSI iRODS
wtsi-npg/npg_irods
Tools for managing HTS (BAM and CRAM) format files in iRODS.
wtsi-npg/npg_porch
wtsi-npg/perl-dnap-utilities
WTSI DNA Pipelines Perl Utility Library
wtsi-npg/valet
Automated data mangement for Oxford Nanopore DNA sequencing instruments
wtsi-npg/containers
Singularity and Docker material
wtsi-npg/logshim-zerolog
logshim-zerolog is a backend using Zerolog for https://github.com/wtsi-npg/logshim
wtsi-npg/npg-irods-python
Applications for the management of data and metadata in iRODS
wtsi-npg/partisan
A Python client API for iRODS
wtsi-npg/samtools_container
Scripts to create a docker container for samtools
wtsi-npg/extendo
An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)
wtsi-npg/build-irods-client-action
GitHub Action providing a custom Docker container in which to build iRODS clients
wtsi-npg/irods_development_environment
wtsi-npg/npg-python-lib
A library of Python functions and classes common to NPG applications
wtsi-npg/npg_langqc
wtsi-npg/npg_ml_warehouse
Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.
wtsi-npg/npg_notifications
wtsi-npg/npg_porch_cli
A command-line client to enable communication with the npg_porch API.
wtsi-npg/npg_seq_common
Utilities for handling NGS data
wtsi-npg/sqyrrl
Sqyrrl - an HTTP server for files hosted in iRODS