wtsi-npg/p4

Issues

• Very old Test::Compile being used

  #341 opened 5 months ago by kjsanger
  2

• Container needs adjustments for PATH so viv.pl and vtfp.pl are available

  #340 opened 6 months ago by jmtcsngr
  0

• Container may need explicit export PERL5LIB

  #339 opened 6 months ago by jmtcsngr
  0

• markdup_none assumes target alignment

  #301 opened 2 years ago by dozy
  0

• Add Samhaplotag processing in P4 template

  #292 opened 2 years ago by dkj
  1

• No reference for samtools's benefit in stage 1

  #242 opened 6 years ago by dkj
  0

• './Build install' installs Changes file and does not install templates

  #225 opened 6 years ago by mgcam
  0

• prune will not purge (branch with) leaf EXEC node which has no explicit outport

  #177 opened 8 years ago by dkj
  0

• final_output_prep - consolidate fopid and phix_or_target and rpt

  #178 opened 8 years ago by dkj
  0

• Check local install location for Perl modules in scripts

  #171 opened 8 years ago by dkj
  1

• overspecified path for temporary files

  #166 opened 8 years ago by dozy
  0

• multiple uses of -prune_nodes, -splice_nodes

  #165 opened 8 years ago by dozy
  0

• Eval use of mbuffer in graphs

  #118 opened 9 years ago by dkj
  0