wtsi-npg/genotyping

Issues

• Add new snpset to snpsets.ini

  #456 opened 7 years ago by iainrb
  1

• Additional tests for QC plex

  #455 opened 7 years ago by iainrb
  0

• Failure to restart quality_control task after error

  #454 opened 7 years ago by iainrb
  0

• Log priority in Sequenom::AssayDataObject

  #453 opened 7 years ago by iainrb
  0

• Failure to install git_version.rb

  #452 opened 8 years ago by iainrb
  0

• Illuminus workflow doesn't check for required argument plex_manifest

  #434 opened 8 years ago by keithj
  2

• Set binary flag when using Text::CSV

  #406 opened 8 years ago by keithj
  1

• Absolute path in QC symlink

  #447 opened 8 years ago by iainrb
  0

• install.sh tries to install Ruby modules to a production install path

  #430 opened 8 years ago by keithj
  1

• Gender pass/fail for missing 'supplied' gender

  #328 opened 10 years ago by iainrb
  0

• Enforce consistency of plex_manifest

  #380 opened 8 years ago by iainrb
  1

• Correct perl/etc path for QC tests

  #71 opened 8 years ago by iainrb
  1

• Remove error message in fluidigm_publisher.t

  #361 opened 8 years ago by iainrb
  1

• Round off identity metric in .csv

  #244 opened 8 years ago by iainrb
  1

• publish_snpset.pl should have a version option

  #437 opened 8 years ago by iainrb
  0

• Changelog minor issues

  #419 opened 8 years ago by iainrb
  1

• Tests should skip if TEST_AUTHOR is not set

  #427 opened 8 years ago by keithj
  0

• Ensure idempotence in file upload

  #426 opened 8 years ago by keithj
  0

• Fluigidm metadata updater is using the old warehouse

  #421 opened 8 years ago by keithj
  1

• Query bug in publish_infinium_genotypes.pl

  #417 opened 8 years ago by keithj
  0

• Undeclared dependency on npg_tracking

  #395 opened 8 years ago by keithj
  1

• Set NPG_REPOSITORY_ROOT in pipeline

  #390 opened 9 years ago by iainrb
  0

• Single Perl install target

  #239 opened 10 years ago by iainrb
  1

• Failure of perl irods test 8

  #44 opened 12 years ago by iainrb
  2

• Enable publish_sample_data.pl to publish from date ranges

  #76 opened 12 years ago by keithj
  1

• Exclude low call rate samples from illuminus

  #78 opened 12 years ago by iainrb
  3

• Record pipeline version

  #81 opened 12 years ago by iainrb
  1

• Prevent plate name overlap in scatterplots

  #67 opened 12 years ago by iainrb
  0

• Resolve database/Plink inconsistencies

  #68 opened 12 years ago by iainrb
  0

• Gender database update error

  #65 opened 12 years ago by iainrb
  1

• Validate .ini file version

  #64 opened 12 years ago by iainrb
  0

• Copy sql directory in Build.PL

  #59 opened 12 years ago by iainrb
  0

• Split QC summary table in PDF for large numbers of plates

  #49 opened 12 years ago by iainrb
  1