Pinned Repositories
bambi
Process Illumina instrument data into SAM/BAM/CRAM files.
baton
iRODS client programs and API
genotyping
Components of the WTSI genotype analysis pipeline.
illumina2bam
Generate and process BAM files from Illumina sequencing instrument files
npg_qc
QC checks and metrics for Illumina NGS data
npg_ranger
NGS data streaming (sam, bam, cram, vcf) - pre-production
npg_seq_pipeline
Processing and analysis of data coming from Illumina sequencing machines
Percolate
A parallel workflow management application.
perl-irods-wrap
Perl iRODS Client Wrapper Library
samtools
Wellcome Sanger Institute - NPG's Repositories
wtsi-npg/npg_ranger
NGS data streaming (sam, bam, cram, vcf) - pre-production
wtsi-npg/samtools
wtsi-npg/pb_calibration
Filter and calibration programs for Illumina BAM files
wtsi-npg/perl-dnap-utilities
WTSI DNA Pipelines Perl Utility Library
wtsi-npg/npg_conda
NPG Conda recipes and tools
wtsi-npg/npg_qc_utils
C programs extracted from npg_qc
wtsi-npg/simtools
Program to create and process SIM files
wtsi-npg/clangdev-feedstock
A conda-smithy repository for clangdev.
wtsi-npg/dalliance
Interactive web-based genome browser.
wtsi-npg/disposable-irods
Scripts to create a minimal, disposable IRODS as a test platform
wtsi-npg/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
wtsi-npg/fsnotify
Cross-platform file system notifications for Go.
wtsi-npg/hp4
wtsi-npg/htslib
C library for high-throughput sequencing data formats
wtsi-npg/irods
Middleware for your critical data.
wtsi-npg/irods_development_environment
wtsi-npg/js_tag_validator
A react web app to validate manifests for Illumina single and dual index runs.
wtsi-npg/llvmdev-feedstock
A conda-smithy repository for llvmdev.
wtsi-npg/logshim
A shim API to provide library-independent logging statements for Go projects
wtsi-npg/ml-warehouse-python
wtsi-npg/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
wtsi-npg/npg_id_generation
wtsi-npg/npg_seq_melt
Operations on processed sequencing data (merges, metadata updates for the archive, etc.)
wtsi-npg/perl-rabbit-wrap
Perl RabbitMQ Client Wrapper Library (deprecated)
wtsi-npg/pytest-it
Decorate your pytest suite with RSpec-style pytest markers, then run `pytest --it` to see a plaintext spec of the test structure.
wtsi-npg/sqlacodegen
Automatic model code generator for SQLAlchemy
wtsi-npg/teepot
wtsi-npg/transponster
wtsi-npg/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
wtsi-npg/workbot
Automation for processing DNA sequence data