jmtyszka

California Institute of TechnologyPasadena, CA

Pinned Repositories

atlaskit
Tools for working with brain atlas labels
Language:Python17 5 38
bidskit
Utility functions for working with DICOM and BIDS neuroimaging data
Language:Python61 9 9541
cbic-psychopy
PyschoPy template scripts for fMRI
Language:Python1 2 01
cbicqc
CBIC Quality Assurance Package
Language:Python00
CIT168-SubCorticalAtlas
Crowd-sourced in vivo probabilistic atlas of subcortical brain nuclei
3 3 12
citatlaskit
Tools for applying the CIT168 atlas to individual MRI data
Language:Shell5 4 12
ET
Matlab video eye tracking
Language:MATLAB1 6 170
FuncLoc
Functional localizer scripts for PTB3
Language:MATLAB4 2 00
mrgaze
Eye Tracking and Gaze Estimation in Python
Language:Python23 9 157
MRIutils
MRI Utility Functions
Language:MATLAB10 3 02

jmtyszka's Repositories

jmtyszka/bidskit
Utility functions for working with DICOM and BIDS neuroimaging data
Language:Python61 9 9541
jmtyszka/mrgaze
Eye Tracking and Gaze Estimation in Python
Language:Python23 9 157
jmtyszka/atlaskit
Tools for working with brain atlas labels
Language:Python17 5 38
jmtyszka/FuncLoc
Functional localizer scripts for PTB3
Language:MATLAB4 2 00
jmtyszka/CIT168-SubCorticalAtlas
Crowd-sourced in vivo probabilistic atlas of subcortical brain nuclei
3 3 12
jmtyszka/cbic-psychopy
PyschoPy template scripts for fMRI
Language:Python1 2 01
jmtyszka/mrikit
MRI Utility Functions
Language:Python1 2 00
jmtyszka/voxface
Fast MRI face voxelator for structural deidentification
Language:Python1 2 0
jmtyszka/cbicqc
CBIC Quality Assurance Package
Language:Python00
jmtyszka/astrokit
Astronomy utilities
2 0
jmtyszka/Betelgeuse_Variability
Visible Light Curve Analysis
Language:Jupyter Notebook2 0
jmtyszka/bloch-simulator-python
Fork of Niraj Amalkant's python port of BrIan Hargreaves original C-language Bloch simulator
Language:Python2 0
jmtyszka/bspm
Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12
Language:MATLAB1 0
jmtyszka/caret_demo
Demo of basic R Caret features
Language:HTML1 0
jmtyszka/CBICQClive
MRI QA script for in vivo EPI data
Language:Python2 0
jmtyszka/ConteCoreExampleScripts
Example PTB3 scripts for dual monitor display with Matlab2017b and Windows 7
Language:MATLAB2 0
jmtyszka/dcmtk
Official DCMTK Github Mirror
Language:C++2 0
jmtyszka/dicomkit
DICOM utilities
Language:Python2 0
jmtyszka/docker-fix
Debugging fork of dockerized FSL ICA-FIX solution
Language:Shell0 0
jmtyszka/fMRI_Utilities
Collection of useful bash and python scripts for fMRI
Language:Shell2 02
jmtyszka/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language:HTML0 0
jmtyszka/freesurfer-editing-utils
Utilities for visualization and analysis or Freesurfer edits
Language:Python2 0
jmtyszka/FrogSpawn
Image Analysis Tools for Spherical Embyros
Language:Matlab2 0
jmtyszka/horos
Horos™ is a free, open source medical image viewer. The goal of the Horos Project is to develop a fully functional, 64-bit medical image viewer for OS X. Horos is based upon OsiriX and other open source medical imaging libraries. Horos is made freely available under the GNU Lesser General Public License, Version 3 (LGPL-3.0). Horos is linked against the Grok JPEG 2000 library, for fast viewing of JPEG 2000 images. This library is licensed under the terms of the GNU Affero General Public License.
Language:C++2 0
jmtyszka/kstars
Desktop Planetarium
Language:C++1 0
jmtyszka/orthomovie
Create orthoslice movies at a given voxel location from a 4D MRI dataset
Language:Python1 0
jmtyszka/osparc-iseg
The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data
Language:C++2 0
jmtyszka/pydeface
Face voxelation
Language:Python2 0
jmtyszka/pyxnat
XNAT in Python
Language:Python2 0
jmtyszka/stellate
Astrophotography FITS stacking and analysis
Language:Jupyter Notebook2 0